Danio rerio (zebrafish): 110437762
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Entry
110437762 CDS
T01004
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
110437762 (prdm1b)
Transcription factors [BR:
dre03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
110437762 (prdm1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
zf-C2H2_6
zf-met
zf-C2H2_15
zf-C2H2_jaz
zf-C2H2_11
Zf-C2H2_ZNF451_C
zf-C2HE
zf-BED
Zf-C2H2_ZNF451
B129_C2H2-zf
zf-MYST
Motif
Other DBs
NCBI-GeneID:
110437762
NCBI-ProteinID:
XP_073788055
ZFIN:
ZDB-GENE-080618-2
Ensembl:
ENSDARG00000098925
LinkDB
All DBs
Position
19:51081232..51113786
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AA seq
661 aa
AA seq
DB search
MKLEASVEDTSGWTEEDFALNCTYIVQDQSSDPRFSLPRAMTSIPRNLSFQYNRDQQVTG
VFSKEYIPQGTRFGPLQGVVYTKENVPLHTNRKYFWRIYSGGQLQHFIDGYDVRLSNWMR
YVNPARSLAEQNLVACQNGPDIFFYTLRPLEPKQELLVWYSPEFSQRLCGQQETTDSTST
KYTSDMEYQKPPLPQYTYYPKHPSNPQNHPCDTNKDDEEPEEKIDIERDTPPDTPDEQIM
DFSKKIHKSEPMHEKTNIYPSLSPPQDVPLHLHSLYGHREGLISSYPSIRSPYPLLPQYN
PHYQHMLIPPYSPPFTSMLPTKPAHRYGFMNPDGLSYPSIPQSGLLPVSLPYPNTLHGGL
NERGHNTPPRGAPATPELSPQTSPCQTHYSECEEAINLSLTTPKSTPPPSASPAMIPGYK
SLPYPLKKQNGKIKYECNVCMKTFGQLSNLKVHLRVHSGERPFQCNLCKKSFTQLAHLQK
HHLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKLCGVKFTQYIHLKLHRRL
HSSRERLHSCAACSRSFIHRFSLRLHQRCGCCPAGRPQAPETLRRAAELLERFDASAEAE
ALPESAAEPQVDAALEEWLARSLQSGEEDGLLRACTGVPQQQDRATVVHFSHRSSIKTEE
E
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaagttggaggcgtcagtggaggacaccagcggctggacggaggaggattttgcctta
aactgcacttacatcgtccaggaccagagcagcgaccccaggttcagcctgcccagagcc
atgacctccataccccgaaacctcagcttccagtacaacagagaccagcaggtgacgggt
gttttcagcaaggaatatattcctcagggtacgagattcggaccacttcaaggggtcgtc
tacaccaaagaaaacgtgccgcttcacaccaacaggaagtacttctggaggatctacagt
ggtgggcagttgcagcacttcattgacggttatgatgtccggctcagcaactggatgcgt
tacgttaacccggcgcgctcgctggccgaacagaacctggtggcgtgtcagaacgggccg
gatatcttcttctacaccctgcggccgctggagcccaagcaggagctgctggtgtggtac
agccccgagttcagccagagactctgtggacagcaggagacgacagacagcacaagcaca
aagtacacatcagatatggagtaccagaagcctcctctacctcagtacacatattacccc
aaacacccctcgaacccacaaaaccatccctgcgacacaaataaagacgacgaggaacct
gaagagaagatcgacatcgagagagacacgccgccagacactccagacgagcaaataatg
gacttcagcaagaagatccacaagtcagaaccaatgcatgaaaaaacaaacatttacccg
agcctgtctccaccgcaggacgtcccgctgcatctacacagcctgtacggtcaccgagag
ggtttgatctcctcatatccgtcaatacggtctccatatccgctcttaccgcagtataac
cctcattaccagcacatgctcattcctccatactctcctccgttcacttcaatgcttccc
acaaaaccagcccaccgatacggcttcatgaatcctgacggtttgtcctatccttcaata
ccacagtcaggtttattacctgtatctcttccatatcctaacacactccacggaggatta
aacgaaagggggcacaatactccccccagaggagcgcctgcaacgccagaactttcccct
cagacttctccttgccagacgcattattctgaatgtgaagaagccataaatctgagtctg
actacacctaagagcacaccgcctccgtcagcctctccagccatgattcctgggtataaa
tctctcccgtatccactgaaaaagcagaacgggaagatcaaatatgaatgcaatgtctgt
atgaagactttcggacagctctccaatcttaaagtgcacttgcgagttcacagtggcgaa
agaccattccagtgcaacctgtgcaaaaagagtttcacacagctcgcccacctgcagaaa
catcacctggtgcacaccggagagaaaccacacgagtgtcaggtgtgccacaagcgcttc
agcagcaccagtaacctgaagactcacctgcgtctgcactcaggtgagaagccatatcag
tgtaagctctgtggagtgaagttcacgcagtacatccacctgaagctccaccgccggctg
cacagctcccgcgagcggcttcactcctgcgccgcctgcagccgcagcttcatccacaga
ttctctctgcgcctgcaccagcgctgcggctgctgtccagccggccggccccaggccccg
gagactctgaggcgtgctgccgagctcctggagcgtttcgatgccagtgccgaagctgag
gcgctgccggagagtgctgcggagcctcaggtggatgcggccctggaggaatggctggcc
cgcagtctgcagagcggagaggaggacgggctcctgagggcctgcactggagtcccacag
cagcaggacagggccacggtggtgcacttcagccacagatcctccataaagactgaggag
gagtag
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integrated database retrieval system
