Danio rerio (zebrafish): 137490581
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Entry
137490581 CDS
T01004
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dre04131
]
137490581 (vps50)
Membrane trafficking [BR:
dre04131
]
Protein recycling
Others
EARP complex
137490581 (vps50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
137490581
NCBI-ProteinID:
XP_017207795
UniProt:
A0A8M6Z2H2
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All DBs
Position
19:43008859..43316652
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AA seq
990 aa
AA seq
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MQKIKSLMARQGLKSPQESVVDMSPVESFRTPSKEELRELREQPTDPQAEQEIIDSIEEV
YYSSDSFDMVQYELEKLPPDLNLLELEEYRDKLKRQQAAVSKRVADLILEKQPSYVKELE
RVTSLQTNLQLAAVICTNARRQLRSAKEGFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYNCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTKVQLAYKLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITTDSYIPCLTDLCKALWEVMLSYYLTMQWHDEHYKEEEASPAAE
DSVAEGSDESTVGRSYVKKKLEHGLTRIWQDVQLKVKAYLLGTDMSNFKYDDFIVVLDVI
SRLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFS
IAQLHEFKFMGQCRSPSVSPSRQPESTDLLELSLFEQYLEGGNPFEMQIDNKEEETEDVL
ASNGYESDELEKSVYQEYDSDSDVPEELKQDYVDEQTGDAPVKSVSRETLRSRKRSDYNL
NRANAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRNDM
HFQSASLPSQGSQPGVSRQTIPVYWYESSGLGLISSRLRTTLSRIQESLIDMESGGENPG
PHASPEERKEKVPSPHLSQLVILTATDTLYGLAERVVATESLVFLAEQFEFLQPHLDTMM
PSAKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLLMAGVKWDIKEIMSQHNV
YVDVLLKEFEKFNLRLGDVSKIVRIPLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEGR
ALMQLDFQQFLMKLEKLTDLRPIPDKEFVETYIKAYYLTENDMEQFIKNHREYSMKQLTN
LVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatcaagtctctgatggcccgtcagggtctgaaaagtcctcaggaaagtgtg
gttgacatgagccctgtggagagcttcaggactcccagcaaggaggagctgagggagctg
agagagcagcccacggatccacaggcagaacaagaaatcattgacagcatagaggaagtc
tactactccagcgactcgtttgacatggttcaatatgaacttgagaaactccctccggat
ctgaaccttctggagctggaggagtacagagataagctgaagcgacagcaagcagccgtg
tctaaacgagtggcggacctcattctggagaaacagccctcctatgtgaaggaacttgag
cgagtgacgtcactgcaaaccaatctgcagctggctgcggtcatctgcactaatgcacga
agacagcttcgctctgctaaagaaggtttcactgaagccagtcttgggctgttagccaat
cagagacgtcgacagctgctgacaggactgttgaagtctttgaggaccataaagactctg
caaagaactgatgttcgactgagcgaaatgctggaggaggaggactatcctggcgccatc
cagctgtgtttagaatgccagaaagctgccagcactttcaaacactacaactgtataagt
gaactgaactccaaactacaggacactctggagcaaatcgaggagcagctggatgtggct
ctgtccaaaacctgcaagcacttcgatgtttctcactacaccaaagttcagctggcgtat
aaactcctgggcaagacgcagacggcgatggatcagctgcacatgcacttcacccaggcc
atccacaacaccgtcttccaggtggtgctgggatacgtggaactctgcgccggcaatgca
gacaccaagttccagaagatgcagtacaaagacctttgcacgcacatcaccacggacagc
tacatcccctgcctgactgacctctgcaaggccttgtgggaggtgatgctcagttactat
ctgaccatgcagtggcacgatgagcactacaaagaagaagaggctagtcctgcagcagaa
gactccgtcgccgaaggctcagacgaatccaccgtgggccgcagctacgtgaagaagaag
cttgaacacggcttaacgcggatctggcaggacgtccaattgaaagtgaaagcctatttg
ctgggaactgacatgtccaacttcaagtacgacgacttcattgtggttctggatgttatc
agcaggttgatgcaggtgggagaggaattctgcggcagtaagtctgaggtgttgcaggag
tccattaagagacagagcgtgaactactttaagaactatcacagaactcgcctggaggag
ctgcgaatgtttcttgaaaatgaaacgtgggaattgtgccctgtgaagtccaacttcagt
atcgcccagctccacgagtttaagttcatgggtcagtgtcgttctccttcagtgtctccc
agcaggcagccagaatccacagatctgctggagctttctctgttcgagcagtacctggag
ggtggaaaccccttcgagatgcagatagacaacaaagaagaggagactgaggacgtcctg
gcttctaatgggtatgagtcagatgagctggagaagagcgtataccaagagtacgacagt
gacagtgatgtacccgaggagctgaaacaggactacgtagatgaacagacaggggacgct
ccagtgaagagcgtgtccagagagacacttcgcagccggaagagatccgactacaacctg
aaccgagccaatgcccccatcctcaccaacaccaccctcaacgtgatccgcctagttggg
aaatacatgcagatgatgaacatcctgaagcccatcgcctttgatgtcatccactgtgtg
tctcagctctttgattattacctgtatgccgtctacaccttcttcggccgcaatgacatg
cacttccaatctgcgtctctgccttcccaaggctctcagcctggtgtttccagacagaca
atcccggtctactggtatgaatcctctggcctgggtttgatcagcagcagattgaggacc
actctcagccgaatccaggagagcctaatagacatggagtctggaggtgagaacccaggt
cctcatgcatctcctgaagaaaggaaagagaaagttcccagtcctcatctgagtcagctg
gttatcctgactgccaccgacacgctgtacggcctggctgagagagtcgtcgccactgaa
tcactagtttttcttgcggagcagtttgagtttcttcagcctcatctggacaccatgatg
ccttcagccaagaagccgttcctgcagcagttctactcacagactgtatcaacggccagc
gagctccgcaagcccatttactggatcgtggcagccaaagccatagattatgagcagatg
ctgctgctgatggctggagtgaaatgggacattaaagagataatgtcacagcacaacgtc
tacgtggatgtccttttaaaggagtttgagaagtttaacctgaggctgggagatgtgtca
aagatcgtgcggattcctctgcctgtgtctaatgtgttatgggagcactgcatccgtctg
gccaacaggacattagtggagggctatgctaatgtgaagaagtgcagtaatgaaggacga
gcgctgatgcagctggacttccagcagttcctcatgaagctggagaagctcaccgacctc
agacccattcctgacaaggagtttgtggagacctacatcaaagcatactacctgactgaa
aacgacatggagcagtttatcaagaaccacagggagtactcgatgaagcagctgactaac
ctggtcaacgtctgcctcgggtcccacatcaacaagaaagcacgacagaaactcctcgca
gccattgatgacattgaccggcccaaaagataa
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