Danio rerio (zebrafish): 141380604
Help
Entry
141380604 CDS
T01004
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM58-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
141380604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dre04121
]
141380604
Enzymes [BR:
dre01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
141380604
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
141380604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_5
RING_XB3-XBAT31
U-box
ANCHR-like_BBOX
Muted
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
141380604
NCBI-ProteinID:
XP_073795707
LinkDB
All DBs
Position
23:complement(44642..50163)
Genome browser
AA seq
540 aa
AA seq
DB search
MSQSKPEERLALELSCPICLQLFRDPVALPCGHNYCLGCIKNAADAEDPKCPKRCPECRE
EYGSPEALPKNFKLSSIVDGFLVATTGGGLKGGTTVPCDQCLDNPVAAVKFCTRCEMSLC
PGHLKKHEERHRSLHVLVGLPAERDGKRCTVHLKVTEYLCVQERLFLCSECLMEGAHQFH
EVQTFEVAKEEMKRVLEELGKLVSDKLQMTETLLKVAQEEPDKPEDRLVARANVLLDNMT
SLINTYKSRMNTAMNDKLHLRDKSRQASLCELEGCLHQLREANQCKDDILCQSSEFLFIQ
NYLNVDAKIRQAANATIPALPVQESSDGKHLRSILCTDAFHTEMSLLLEYLHGVMNPLDL
TFNPATAHPNLLLSGDLKTVKQCAGAKSSVSGDPGERFTSVSQVMCAQGFSTGVHMWAVE
VGPGCAWSVGLCYKSIPRKGDHSRLGHNSSSWRLQWKSKKLTACHDSTSIPVGESLLVPP
KKVEVSLDYEGGTAAFHSSGQGGRKQHLHTFSAVFRDVVFPAFGILSTSEESWITLRSGV
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagagtaaaccagaggagcgtctggctttggagctgagctgtcccatctgtctg
cagctctttcgggaccccgtggcgcttccctgcggacacaattactgcctgggctgcatt
aaaaacgctgccgatgctgaagacccaaagtgcccgaaacgctgcccagaatgcagggag
gaatacggcagcccagaggctcttcccaaaaactttaagctcagcagtatcgtggacgga
tttctggtggccacgactggaggaggactgaagggaggaactacagtcccgtgtgaccag
tgtttggataatcccgtggctgcggtgaagttctgcacacgctgtgagatgtctttgtgt
ccaggccacctcaaaaaacatgaagagcggcaccggtcactgcatgtgttagtggggctg
cctgcagaacgggatgggaaacgatgcacggtgcatttaaaggtgaccgaatatctgtgt
gtgcaggagagactgttcctctgctccgagtgcctgatggagggcgcgcaccagttccac
gaggtgcagacctttgaggtggccaaggaagaaatgaagagagttcttgaggaactgggg
aagttggtgtccgataagctgcagatgactgaaactctgctaaaagtcgcacaagaggaa
cccgacaaacccgaagatagactggtggccagagcaaacgtcctgctggacaacatgacg
tcccttattaacacatacaagagtcgtatgaacaccgccatgaatgacaagcttcacctg
cgggacaagagcagacaggccagtctctgtgagttagagggatgcctccaccagctgcgg
gaagcaaaccagtgcaaagacgacattctctgtcaatcctcagagttcctcttcatccag
aactacctcaacgtcgacgcaaagatacggcaggctgcaaacgccaccatccctgctctg
cccgtacaagagtcgtctgacggaaagcacttacgctccatcctctgcacggacgccttt
cacacagagatgagtcttcttctggagtatctgcacggggtgatgaacccgctggacctg
accttcaacccagccacggctcacccaaatctcctgctgtccggcgatctgaagacagtc
aagcagtgcgctggagccaagagcagcgtgtctggagaccccggcgagcgctttacctcc
gtgtctcaggtgatgtgtgcgcagggtttctccacaggtgtgcacatgtgggcggtggag
gtcgggccgggctgtgcatggtctgttggcctgtgctataaaagcatcccacggaaagga
gaccacagcagactgggccataacagcagctcgtggaggctccagtggaagagcaagaag
ctgacggcgtgccacgactccacgagtataccggtgggagaatcgctgctcgtgccgccg
aagaaggtggaggtgagcttagattatgaaggaggaacggctgcgttccacagctcgggt
cagggaggcagaaagcagcatctgcacacgttcagtgctgtgttcagggatgtggtgttt
cctgcgttcggcatactctccacctcggaggagtcctggataactctgcggagtggagtt
tga
DBGET
integrated database retrieval system
