KEGG   Danio rerio (zebrafish): 260439
Entry
260439            CDS       T01004                                 
Symbol
copA
Name
(RefSeq) coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dre04131]
    260439 (copA)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    260439 (copA)
Membrane trafficking [BR:dre04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    260439 (copA)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   260439 (copA)
  Exosomal proteins of bladder cancer cells
   260439 (copA)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st EIF3I WD40_Gbeta Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_DCAF4 NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 260439
NCBI-ProteinID: NP_001001941
ZFIN: ZDB-GENE-020905-2
Ensembl: ENSDARG00000004173
UniProt: Q6DRK5
LinkDB
Position
2:40156252..40185591
AA seq 1224 aa
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVDTE
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPRESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDAEGVTLFDVQQK
RSLATVKIAKVKYVVWSSDANHVALLAKHAIMICNKKLESLCNIHENIRVKSGAWAENEV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFK
LALVNRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLTKLRKMM
KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETFDL
EKEMVPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGRAGQMVADLDMDAP
GGEGWGEDAELHLDEDGFMDAQEGLGDEGAIGKDDGGGWDVEEDLDLPPELDVPSVGGGG
AEGEGFFVPPTKGTSPTQMWCNNSQLSVDHILAGSFETAMRLLHDQVGVVQFGPYKQLFM
QTLSRGRTCYLGLPSLPCLHSFPLRNWKDSGPKGGLPAVGLRLADLISRLQQCYQLTTSG
RFEDAVERFRAILLSVPLLVVDNKQEIAEAQQLITICKEYIIGLTMETERKKLPKDSLDE
QKRICEMAAYFTHCSLQPVHMVLVLRTALNLFFKLRNFKTAAGFARRLLELGPKPEVAQQ
TRKILAACEKSLTDAHQLNYDPHNPFDICAASYTPLYRGRPVEKCPLSGACYCPKYKGEV
CRVTQVTEIGKDVIGLRVSPLQFR
NT seq 3675 nt   +upstreamnt  +downstreamnt
atgttgaccaaatttgagacaaagtcggcccgagtgaaagggctgagtttccatccaaag
cggccctggatactcgctagtttgcacaatggtgtcatccagctgtgggattatcgcatg
tgcactctaatcgacaagtttgatgaacacgatggtccagtcagaggtattgactttcat
aagcagcagcctctgtttgtgtctggaggagatgactacaagatcaaggtttggaactac
aagctgcgtcgatgtcttttcactcttcttggacatcttgactacattcgcaccacattc
ttccaccatgagtacccctggatcttgagtgcttcagatgatcagactattcgtatttgg
aactggcagtccaggacgtgtgtctgtgtgctgacgggacataatcattatgtgatgtgc
gcacagttccatccctctgaggacctggtggtgtcggcaagcttggatcagactgtgcgc
gtgtgggatatttccggtctgagaaagaagaacttatctccgggtgctgtggacactgag
gtgcgcggcatctctggtgtcgacctgtttggagcctctgatgcagtagtcaaacatgtt
ctggagggtcatgatcgaggcgtaaactgggcagctttccatcctagcatgcctcttatt
gtgtcaggagccgatgaccggcaggtgaagatttggaggatgaatgagtctaaagcatgg
gagttggacacctgtcgaggacactacaacaatgtgtcctgtgcggtgtttcacccccgt
caggagctcatcctgtccaactctgaggacaagagcatccgtgtgtgggatatgtccaag
agaacaggcgtccagacctttcgcagagatcacgaccgcttctgggttctgggtgctcac
cccaacctcaacctgtttgctgctggccatgacagtggaatgctggtgtttaaactggaa
agggaacgtccagcttatgcagtgtatggcaacatgctttactatgtaaaggatcgtttc
ctgcgtcagctcgactttaacagcagtaaagatacagctgtgatgcagctacgcagtgga
tccaaattcccagtgttcagcatgtcctacaacccagcggaaaatgctgtgctgttgtgc
actagagctactaatttggaaaacagcacctatgatctgtactccattcccagagagagt
gactcccagaatcctgatgctcctgagggaaaacgctcctctggtctgactgcagtttgg
gtggccaggaaccgatttgctgtacttgaccgcatgcactctctcttgataaaaaacctg
aagaatgagattgtgaagaaggtccaggtcccgagctgtgaggagattttctatgctgga
actggctcactcctgctgcgggatgctgaaggagtcactctatttgatgtccagcagaag
cgctctctggccacggtcaaaatagccaaagtcaaatatgtggtgtggagctccgacgcc
aaccacgtggccctgctggccaaacatgccatcatgatctgcaacaagaagttagagagt
ctctgcaacatccatgagaacatccgggtgaagagtggagcctgggctgagaatgaagtc
ttcatctacaccacctccaaccatatcaaatatgctctgacttctggcgatcatggtata
atccgtacattggatctgcccatctatgtgacaagagtgaggggtaacagtgtttattgc
ctggatcgggagtgcagaccacgtgtgcttaacattgaccccaccgagtaccgctttaaa
ctggctctggtcaaccgcaaatatgaagaggttcttcacatggtgcgtaatgctaagcta
gtaggccagtccatcattgcctacctacaaaagaagggctacccagaggtcgcgctgcat
ttcgtcaaagatgagaagactcgtttcagtttggcactggagtgtggaaacattgaggtg
gcgctggaggctgcaaaagccctagatgagcgaagctgttgggagcgtcttggtgaggct
gcacttctgcagggccatcaccaggtggtggagatgtgctaccagagaaccaagaacttt
gacaagctcacatttctgtacctcatcactggcaacctgacaaagctcaggaagatgatg
aagatcgctgagataagaaaggacatgagtggacactatcagggcgctctgtacctgggt
gacgtcagtgagcgagtgcggatcctcaagaactgtgggcagaagtctctagcttacctg
accgctgccactcacgggatggatgaggaagctgaagccctgaaggagacctttgacctt
gaaaaagaaatggtgccagaggtggaccccaacgctcaactgctgcagcctccacctccc
atcaaccctctggacacaaactggcctttgctcacagtctccaagggcttctttgaggga
gctatcgctgccaaaggacgagcagggcagatggttgctgatctggacatggatgctcca
ggaggagaagggtggggagaagatgcagaacttcatttggatgaagacggcttcatggat
gctcaggagggactgggtgatgagggagccattgggaaagacgacggaggaggctgggat
gttgaagaagatctggatctcccaccagagctggacgtaccttctgttggtggaggtggc
gcagagggtgaaggcttctttgtgccacccactaagggcacaagcccaacccagatgtgg
tgcaacaactctcagctgtcagtggatcacatactggctggctcttttgagactgctatg
aggttgctacatgaccaggttggcgttgttcagtttgggccgtataagcagctcttcatg
cagactttgtcccgcggccgcacctgttacctgggcctgccatctttgccctgcctgcac
agttttcccctgaggaactggaaggacagcgggcctaaaggaggtctgccagcagtgggt
ctgcgtctcgctgacctcatctctcgcctgcagcagtgctatcagctgaccacctcaggc
cgattcgaagatgccgtggaacgcttcagagccattctcctctccgtgcctctgctcgtg
gtcgacaacaaacaagagattgcagaggcccagcagctgatcactatttgtaaggagtat
attattggcctcacgatggagacggagaggaagaaactccctaaagacagtcttgatgag
cagaagagaatttgtgagatggcggcgtatttcacacactgcagtcttcagcctgtccac
atggtgttggttttgagaacggcactcaatcttttcttcaaactgcgcaactttaaaact
gcagcaggttttgctcgccgtctgcttgagctaggccccaaacctgaagtggcacagcag
acacgtaaaattctctctgcctgtgagaagagtctgacagatgctcaccagctcaactat
gatccccacaatcccttcgacatctgcgcagcctcttacactcctctgtaccgcgggcga
cctgtagagaaatgtcccttgtctggagcctgctactgccccaaatacaaaggagaggtc
tgcagggtcacacaggtaactgagattgggaaagatgtgatcgggttgcgtgtcagtcca
ctgcagttccgctga

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