Danio rerio (zebrafish): 30189 Help Entry 30189             CDS       T01004                                  Symbol ptch1 Name (RefSeq) protein patched homolog 1   KO K06225   patched 1 Organism dre  Danio rerio (zebrafish) Pathway dre04340   Hedgehog signaling pathway Brite KEGG Orthology (KO) [BR:dre00001]  09130 Environmental Information Processing   09132 Signal transduction    04340 Hedgehog signaling pathway     30189 (ptch1) SSDB OrthologParalogGFIT Motif Pfam:  Sterol-sensing TRA2_N Patched DcrB Motif Other DBs NCBI-GeneID:  30189 NCBI-ProteinID:  NP_001292471 ZFIN:  ZDB-GENE-980526-196 Ensembl:  ENSDARG00000016404 UniProt:  F1R8E2 LinkDB All DBs Position 8:32043114..32148341 Genome browser AA seq 1475 aa AA seqDB search MASAVNVSSEQENRDPDRPRVTRRNRGNYRTAAADLEYLQRPSYCDAAFALEQISEGNAT GRKAPLWLRAKFQRLLFKLGCYIQKNCGKFLVVGLLIFGAFAVGLRAANLETDVEKLWVE VGGRVNQELKYTRQKIGEEAMFSPQLMIQTPRQEGANILTVEALKQHLDSAIKASRVHVY MYNRQWTLEHLCYKSGELVTETNVVDQILEKLHPCLVITPLDCFWEGAKLHSGTFYLPGK PPLQWTNFDPMGFIAELKMLKYQVDSWEEMLVKADVGQGYMNRPCLNPADPDCPLSAPNK NTTGPFDVAPVLTGGCYGLSKKYMHWQEELIVGGTKKNDSGKLLSAQAFQTMFQLMTPKQ MYEHLKGYDEVSHINWNEDKAAAILEAWQRKYSEAVQQSVPVNSSQKVLTFTTTTLEDIL KSFSDVSVIRIASGYLLMLAYACLTMLRWDCAKSQGAVGLAGVLLVTLSVAAGLGLCSLL GISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALT SISNVTAFFMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRFDIF CCFVSPCANRVIQLEPQAAYADSSADSSRYSPPPSYSSHSFAQHTQITMQSTVQLRTEYD PRTQAYYTTAEPHSHISVQPYAPNTNPNPNPNRNNNNNNCTNNSSSAVPGVATDTASCQS PDGASSTRDLLSQFGDSGIRCLDSPYSRWTFASFAEKHYAPFLLQSTTKVVVIFLFLALL GVSLYGTTRVRDGLELTDIVPRETGEYDFIRAQFRYFSFYNMYVVTQRADYAQIQPQLYE LHQRFGSVKYILREENGQLPRMWLHYFRDWLLGLQEAFDKDWQAGRITQGNYRNGSDDGV LAYKLLVQTGRREKTITRQRLVSADGIINPNAFYIYLSAWVSNDPVAYAASQANIRPHPP EWLHDRTDSIPASRLNIPAAEPIEYAQFPFYLNGLRETPQFVEAIESVRAICNNFSRQGL PSYPNGYPFLFWEQYVGLRHWLLLSISVVLACTFLVCAVFLLNPWTAGIIVLVLSLMTVE LFGMMGLIGIKLSAVPVVILIASVGIGVEFTVHVALAFLTAIGDRNKRAVLALEHMFAPV LDGAFSTLLGVLMLAGSEFDFIVRYFFAVLAILTVLGVLNGLVLLPVLLSYFGPYPEVSP ADGQSRLPTPSPEPPPQVVRFTMRPSHTTPGAGSDSSDSEYGSNTTVSGISQELQQYNLQ PNRGRSARLEEVRIATAGRQGSRQVELPMFPSCSDDSRQQQIQQHYRSSSHDAAPQPSKR YCSRDPKRDFGSGHPPPPHRPRMDAFETATEPGGHSGPNHRDRSGAHRPRSHNPYNPHPS HPSTGPNYCQPITTVTASASVTVAVHSGVPSQSPAYPSYPSNDSYQTSGDVHNDPHFSDP HVPFDESHDSSKVEGMELQDLEYDTANVCHTRPSS NT seq 4428 nt NT seq  +upstreamnt  +downstreamnt atggcctcggctgttaatgtctcctccgagcaggaaaacagagaccccgatcggccgagg gtaacgcggagaaataggggcaactatcggaccgccgcggcggatttggagtatttgcag cggccgagctattgcgatgccgcctttgcgctggagcagatatcagaggggaatgcgact gggaggaaagcgccgctgtggttgagagcaaagtttcaaagacttttgtttaaacttggc tgttacatacaaaagaactgcggaaagtttttagttgtgggccttttaatattcggagct tttgctgttggcttaagggcagctaatctggagacggacgtggagaaactctgggtagaa gtgggtggcagggtgaatcaggaactcaagtacacacggcagaagatcggagaggaggcc atgtttagtcctcagctcatgatacagacgcctcgtcaggaaggtgctaacattttgacc gtagaggcgctaaagcagcacctcgactctgccataaaggccagcagagtgcacgtttac atgtacaacaggcaatggacattggaacatttatgctacaaatcaggagaacttgttacc gaaaccaatgttgtggaccagatcttagaaaaactgcacccttgtcttgtcatcactcct ctggactgcttctgggaaggtgctaagctacattcaggaacattctatctccctggcaaa cccccattacagtggaccaacttcgatccgatgggcttcattgctgagttgaagatgctg aagtatcaggtggacagctgggaggagatgctggttaaagcagatgtgggtcaaggttac atgaaccggccctgcctgaatcctgcagaccccgactgcccattatcagctcccaacaag aacaccacagggccttttgacgtggctcctgttctgactggtggctgctatgggctttcc aaaaagtacatgcactggcaggaggagcttatcgtaggtgggaccaagaagaacgacagc ggcaaacttttgagtgcacaggcctttcagaccatgttccagctcatgaccccaaagcag atgtacgagcacttgaagggctacgatgaggtttcgcacatcaactggaacgaggacaaa gcagctgccatactagaagcctggcagaggaaatactctgaggctgtccagcagagtgtg ccggtaaattcctctcagaaagtgctcacgttcaccaccaccaccctggaagacatcctg aagtccttctctgatgtcagcgtgatccggatcgccagtggctacttgctaatgcttgcc tatgcgtgtctgaccatgctacggtgggactgcgccaagtctcagggggcggtcggcctg gctggagtcctgctggtcactctttctgttgccgctggattgggactctgctcgcttttg gggatctccttcaacgccgctaccacacaggtgttgccgttcctggctcttggcgtcggg gtggacgatgtctttctcctggctcatgctttcagcgaaaccggccagaacaagaggatt cctttcgaggaccgcactggtgaatgtctgaagagaactggcgctagcgtagctttgacc tccatcagtaacgtgacagcgttttttatggccgcccttatcccaataccagcactcaga gctttctccctacaggcggcagtggtggtggtgtttaactttgccatggtgctactcatc tttcctgccatcctcagcatggacctgtatcgcagagaggaccgccgctttgacatcttc tgctgctttgtcagcccttgcgctaaccgagtgatccagttggagccacaggcagcgtat gccgattcctcagcggactcgagtcgctacagccctccaccctcctacagcagccacagt ttcgcccagcacacccaaatcaccatgcagtccaccgtacagctgcgcaccgaatatgac cccagaacacaggcctactacaccacggctgagccccattcccacatctctgtccaaccc tacgcccccaatacaaatcctaaccccaaccccaaccgcaacaacaataacaacaactgc accaacaacagcagcagtgcagtgccaggagtagccactgatacagcatcctgccagagt ccagatggcgccagctccacacgagacctgctatctcagtttggggattcgggtatacgt tgtctggattctccgtattcaagatggactttcgcatcatttgctgaaaagcactacgca ccatttctgcttcagtctacaacgaaggtggtggtgattttcctgttcctggcactcctc ggggtcagtctgtacggcaccacccgcgttcgggatgggttagagttgactgacattgtg ccacgggagacgggtgaatatgacttcatacgtgcccagttccgttatttttcattctac aacatgtacgtggtgacccagagggcggactacgcacagatccagcctcagctctatgag ctgcaccagcgctttggctctgtgaagtacatcctgcgggaagagaacggccaactcccg cgcatgtggctgcattacttcagagactggctgctaggtctgcaggaggcgtttgataag gactggcaggctggtaggatcactcaggggaactacaggaacggctcggatgatggtgtt ttggcctataaactcctggtgcagaccggtcgcagggaaaaaacgattaccagacagcgg ttggtgagcgcagatggaataatcaacccaaacgctttctacatttatttgtctgcctgg gtgagcaatgacccagtggcctacgccgcatcccaggccaacatccgtccacaccctcca gagtggctccatgacaggacagactccattcctgccagcagacttaacattcctgccgct gagcccatcgaatatgcacagtttcccttctacctcaacgggcttcgcgagacgccacag ttcgtggaggccatcgagagcgttcgcgccatctgcaacaacttcagtcgccaaggtctt cccagctaccccaacggctaccccttcctcttctgggagcagtatgtaggcctacgccac tggctcctgctttccatcagcgttgtgctggcctgcacctttttggtgtgcgcagtcttc ctgctcaacccctggactgccggaatcatagtgttggttctgtctttaatgacagtagag ctttttggtatgatgggattgatcggcatcaagctcagcgctgtgcctgtcgtcatcctc atcgcttccgttggcatcggagtggagttcactgttcacgtggcactggcattcctcaca gccatcggtgacaggaacaagcgagccgttcttgcactggaacacatgttcgccccagtg ctggatggagcgttttctactctgctaggagtcttgatgctggcagggtcagagtttgac ttcatagtcaggtatttcttcgctgttttggccatcctaacagtgttaggggtcctgaat ggactggtgctgctcccagtcttattgtcctactttggcccttatcctgaggtatctcca gcggatgggcaaagccggctgcccaccccgtctccagagcctccgccacaggtggtccgc ttcaccatgcgtccaagtcacacgacccctggagctggttcagactcctcagactcagaa tacggctctaacacaactgtgtccggaataagccaggagcttcagcagtacaacctccag cccaacagggggcgatcagccagactggaggaggtgcggatcgccacagcaggacgacaa ggcagccgtcaagttgaactgccaatgtttccttcttgctcagatgactccagacagcag caaatacagcagcattacaggtccagttctcacgatgctgctcctcagccgtcaaagcga tattgtagcagggaccctaagagggactttgggagcggtcacccgcctcctcctcacagg cctcgcatggatgcttttgaaaccgctactgagccaggaggccattcaggccccaaccac cgggaccgctcaggggcccatcgcccccggtcccacaacccctacaacccccacccctcc catccgtccactggccccaattactgtcagcccatcacaacggtaacggcctcagcttca gtgacagtcgccgttcattcaggagtgcccagtcagagccccgcgtacccgtcctacccc tccaatgacagctatcagacttcaggagacgtccacaatgacccacacttctccgaccct cacgtgccctttgacgagagccacgacagctcgaaagtggagggcatggagctgcaggat ctagaatatgacactgccaatgtctgccacacaagaccctccagctga

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