Danio rerio (zebrafish): 30203
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Entry
30203 CDS
T01004
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
30203 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
30203 (cpsf4)
03019 Messenger RNA biogenesis [BR:
dre03019
]
30203 (cpsf4)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
30203 (cpsf4)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
30203 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCHC
zf-CCCH_4
zf-CCHC_3
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
30203
NCBI-ProteinID:
NP_571084
ZFIN:
ZDB-GENE-990415-180
Ensembl:
ENSDARG00000020217
UniProt:
Q98881
LinkDB
All DBs
Position
3:40289387..40295257
Genome browser
AA seq
271 aa
AA seq
DB search
MQELIATVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEYFMRAACMKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGATEQPP
LPQQVQTQQKQQNMQPINRSSQSLIQLTNPNISNNNHQRIPNAVGIVHSNSHMGGARGPR
PLDQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaattaatcgccactgtcgatcacatcaagtttgatcttgaaatcgctgttgaa
caacaattaggcgctcagccgttgccatttccaggaatggataaatctggcgctgctgta
tgcgagtacttcatgagagctgcttgtatgaaaggtggaatgtgtcccttcagacacatc
agtggagaaaagactgtggtgtgcaagcactggcttagaggcttgtgcaagaaaggagat
caatgtgaatttttacacgagtacgacatgactaagatgcccgagtgttatttctactct
aaatttggggagtgcagtaataaagagtgtccattcttgcacattgacccagaatctaag
attaaagattgcccgtggtatgataggggtttttgtaaacatggtccggattgcaggcac
agacacactagaagagtcatttgtgtaaattacctggttggcttttgtccagagggcaag
tcatgcaaatttatgcacccaagatttgaacttccgatgggtgcgactgaacagccacca
ctgccacaacaagtacagactcagcaaaagcagcaaaacatgcagcccataaacaggtca
tcacagtcactcatccagttaaccaaccccaacatcagcaacaacaaccaccagagaatt
ccaaacgctgttgggatagtgcactctaacagccacatgggtggagctcgtggccctcgc
ccgctggaccaagttacatgttacaagtgtggtgaaaagggccattacgcaaacaaatgc
acaaaaggacacctggcgtttttgagtggacagtga
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integrated database retrieval system
