Danio rerio (zebrafish): 30544
Help
Entry
30544 CDS
T01004
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
30544 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
30544 (sox17)
Transcription factors [BR:
dre03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
30544 (sox17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Sox17_18_mid
HTH_24
Motif
Other DBs
NCBI-GeneID:
30544
NCBI-ProteinID:
NP_571362
ZFIN:
ZDB-GENE-991213-1
Ensembl:
ENSDARG00000101717
UniProt:
Q5PQZ5
LinkDB
All DBs
Position
7:complement(58773148..58776152)
Genome browser
AA seq
413 aa
AA seq
DB search
MSSPDAGYSSDDPSQTSSCSSVMMPGMGQCPWVDPLSPLSDSKSKHEKCSAAGPGRGKSE
PRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPMVDKRPFVEEAERLR
VKHMQDHPNYKYRPRRRKQVKRNKRLEPSFPLPGMCDAKMTLCTEGMSAGYSGAGLPQYC
ENHTLFESYSLPTPDPSPMDAGTTEFFAQLQDQSAFSYHHQQEHHFQEQTNILNDTHCHG
NTQTLKSRQSHSIAYSNINTNTNSNLHAPINAQLSSINLQQVFHENANPQISHHPGTHLN
IFNRSPSSSSHHAMTPAYLNCPSTLDTFYNSSSQMKELSHCVSSHTHKQQSIAEAQSQAS
TATHSSGQMVDEVEFEHCLSFGVPSAPLPGSDLISTVLSDASSAVYYCGYNNS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccgatgcggggtactccagtgacgatccgagccaaaccagcagctgcagc
tcagtcatgatgcctggcatggggcaatgtccgtgggtggacccgctcagtccgctctca
gactccaaatctaaacacgagaaatgctctgcggcgggtcccgggcgcggaaagagcgag
ccgcgcatccgaaggccaatgaacgcgtttatggtgtgggcgaaagatgagcgcaagagg
cttgcgcagcaaaacccagacctgcacaatgcggagctgagtaaaatgcttggtaagtca
tggaaagctttaccaatggtggacaaacgtccattcgttgaggaggccgaacgtctacga
gtcaaacatatgcaagaccacccaaactacaaatatcgacccaggcgtcgcaaacaggtg
aaacgaaacaagcgattggagcccagctttccgcttcctgggatgtgtgatgccaaaatg
accctgtgcacggaaggtatgagtgctggttattcaggagcaggactgcctcagtactgc
gagaaccatacattgtttgagtcctacagcttgcctacacctgacccctctcctatggat
gccgggacaactgagttttttgcccagcttcaggatcagtcagcattcagctaccatcac
cagcaagaacaccactttcaggaacaaaccaacatcctcaatgacacacactgtcatggc
aacacacagacactcaaaagcagacagtctcacagcattgcttactccaacatcaacaca
aacaccaattctaacttgcacgctcccatcaatgcacaactcagttcaataaacctgcag
caggtatttcacgagaacgccaacccgcaaatcagtcatcatccgggtactcacctcaac
atttttaacagaagcccctcctcttcttctcatcatgctatgacccctgcgtacctgaac
tgcccatcaactttagacaccttttataattccagctctcaaatgaaagagttgtcacat
tgtgttagcagccacacacataaacagcaaagcattgctgaggcacaatcacaggcctct
acagcaacccacagttctggtcaaatggtggacgaggtggagtttgagcactgtctctct
tttggggtccccagtgcacctttgccggggtctgacttaatctccactgtactgtcagac
gctagcagtgctgtatactactgcggctataataattcttga
DBGET
integrated database retrieval system
