Danio rerio (zebrafish): 30602
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Entry
30602 CDS
T01004
Symbol
sox11a
Name
(RefSeq) transcription factor SOX-11a
KO
K09268
transcription factor SOX11/12 (SOX group C)
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
30602 (sox11a)
Transcription factors [BR:
dre03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
30602 (sox11a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Peptidase_S30
Motif
Other DBs
NCBI-GeneID:
30602
NCBI-ProteinID:
NP_571411
ZFIN:
ZDB-GENE-980526-395
Ensembl:
ENSDARG00000077811
UniProt:
Q9I9C8
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All DBs
Position
17:complement(35878547..35881807)
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AA seq
354 aa
AA seq
DB search
MVQQTDNSETDSMSREATDSDESEFMVSINPDWCKTATGHIKRPMNAFMVWSKIERRKIM
EQSPDMHNAEISKRLGKRWKMLKDSEKIPFIREAERLRLKHMADYPDYKYRPKKKPKLDS
SSKPSAPSPEKCSKTSKSSKKCPKLKANKTGSKSSSHGYGDEYAFKSTKVSKTVHIKSEF
TDEDDDDDSEEDSRVRVKEEEEDPIRAYNVAKVPASPTLSSSTESEGASMYEEVRNNRLY
YNFKNITKQSTMYPASVSPASSRSVSTSSSSSEDADDLLFDFSLNFASSAQSSELGSQNP
GNLSLSLVDKELESFSEGSLGSHFEFPDYCTPELSEMIAGDWLEANFSDLVFTY
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atggtgcagcaaacggacaacagcgaaacggacagcatgtctagagaagccactgactct
gatgaaagcgaattcatggtctcgataaacccagactggtgcaagacagccaccggacac
ataaagcgaccgatgaacgcgttcatggtgtggtctaaaatcgagcggagaaagatcatg
gaacagtctccagacatgcacaacgccgagatctccaaacgcttggggaagcgctggaaa
atgctgaaagacagcgaaaagatacctttcatcagggaagccgagagactccggttgaaa
cacatggctgactaccccgactacaaatacagaccgaagaagaaaccaaagctggacagt
tcatccaaaccttcagccccgtctccggaaaagtgcagcaagacttccaagagctccaag
aaatgtcccaaactgaaagcgaacaagacggggagcaagtcgtcgtctcacggctacgga
gacgagtacgcgttcaagagcacgaaagtttcaaagactgttcacattaaaagtgaattc
acggacgaagacgacgatgacgactccgaggaggactctcgggtcagggtgaaagaggag
gaagaggatccgatacgagcctacaatgtagcaaaagttcccgccagcccaactttgagc
tcgtccaccgagtctgaaggcgccagcatgtacgaggaggtccggaacaacagactctat
tacaacttcaaaaacatcaccaagcagagcacaatgtatcccgcatccgtctcaccagca
tcctctaggtccgtttccacgtcttccagctcgagcgaagacgcggacgacttgcttttt
gacttcagtttgaacttcgcctcctccgcgcaaagctcggagctgggcagccaaaatcca
gggaatctctccctctctctggtggataaggagttggagtcttttagcgagggcagcctg
ggctcccactttgaatttccagactattgcacgcctgagctcagcgaaatgatagctggg
gactggctcgaagcgaacttttcggacttggtttttacatactaa
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