Danio rerio (zebrafish): 30663
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Entry
30663 CDS
T01004
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
30663 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dre04121
]
30663 (rag1)
Enzymes [BR:
dre01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
30663 (rag1)
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
30663 (rag1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1
RAG1_pre-RNase_H
RAG1_ZnC2
RAG1_DNA-bd
zf-C3HC4
zf-C3HC4_2
zf-RING_10
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
U-box
Motif
Other DBs
NCBI-GeneID:
30663
NCBI-ProteinID:
NP_571464
ZFIN:
ZDB-GENE-990415-234
Ensembl:
ENSDARG00000052122
UniProt:
O13033
Structure
PDB
PDBj
LinkDB
All DBs
Position
25:9800090..9809395
Genome browser
AA seq
1057 aa
AA seq
DB search
MEKGRWSSEDAPRASMPDELSHPKFSEWKFKLFRVRSMEKAPVQNETPVEKENQPELAME
KTSSQGSVMRLCFGGKSKENVESARGRVDLKLQEIDTHMNLLKNMCRLCGIAIQKAKGPS
HEVQGVLEESSRCALRRMGCKLVTWPEVILKVFKVDVTTDMETVHPSLFCHRCWTAAIRG
GGFCSFTNTRIPDWKPHTSQCNLCFPKKSSFQRVGRKRTKPLKSAHILPKRFRRDSSESS
RVWRQTTENPDGKEWLKLSVQRGQWVKNITRCQRDHLSTKLIPTEVPADLIRAVTCQVCD
HLLSDPVQSPCRHLFCRLCIIRYTHALGPNCPTCNQHLNPSHLIKPAKFFLATLSSLPLL
CPSEECSDWVRLDSFREHCLNHYREKESQEEQTPSEQNLDGYLPVNKGGRPRQHLLSLTR
RAQKHRLRDLKNQVKTFAEKEEGGDVKSVCLTLFLLALRAGNEHKQADELEAMMQGRGFG
LHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNAEKELLPGFHQFEWQP
ALKNVSTSWDVGIIDGLSGWTVSVDDVPADTISRRFRYDVALVSALKDLEEDIMEGLRER
ALDDSMCTSGFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTIMSISIRLEGEDDGI
TIFQEQKPNSELSCRPLCLMFVDESDHETLTAILGPVVAERKAMMESRLIISVGGLLRSF
RFFFRGTGYDEKMVREMEGLEASGSTYICTLCDSTRAEASQNMVLHSITRSHDENLERYE
IWRKNPFSESADELRDRVKGVSAKPFMETQPTLDALHCDIGNATEFYKIFQDEIGEVYQK
PNPSREERRRWRSTLDKQLRKKMKLKPVMRMNGNYARRLMTREAVEAVCELVPSEERREA
LLKLMDLYLQMKPVWRSTCPSRDCPDQLCQYSYNSQQFADLLSSMFKYRYDGKITNYLHK
TLAHVPEIVERDGSIGAWASEGNESGNKLFRRFRKMNARQSKTFELEDILKHHWLYTSKY
LQKFMEAHKNSVKAMQATFNPEETPEEADNSLDVPDF
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagggaggtggagttctgaagatgctcccagagcctccatgcctgacgaactg
tctcatcctaagttttcggaatggaagtttaagctctttcgggtcaggtccatggagaag
gcccctgtgcaaaatgaaacaccggtggagaaggaaaaccagcctgagctggcaatggag
aagacaagctctcaaggcagtgttatgaggctctgttttggagggaagagcaaagaaaat
gtggagagtgctcgagggagagtggaccttaagctacaggagattgatacacacatgaat
cttctcaaaaacatgtgccgcctttgtggcattgcaatacagaaggctaaaggtccatca
catgaagttcagggggttttggaggagtcaagcagatgtgccttacgcaggatgggctgc
aagctggtgacctggccggaggtgatcttgaaggtcttcaaggtggatgtgacaaccgat
atggagacggttcatccgtctttgttttgtcacaggtgctggactgctgccataagggga
gggggtttctgttccttcaccaatacccgaatcccagactggaagccccacacctctcaa
tgcaacctttgcttccctaaaaagagctcttttcagcgagtaggaaggaagcggactaaa
ccacttaaaagtgcacacatccttcctaagagattcaggagggactcgtcagaatcctca
agagtgtggagacagaccacagagaatccagatgggaaagaatggttaaaactatcagtt
cagagaggacagtgggtaaagaatatcacacggtgccagagggaccatctgagcactaag
ctcatccccactgaagtcccagcagacttgatacgcgcagttacttgccaagtgtgtgat
cacctgctttctgaccccgtccaatcaccatgtcgacacctgttctgtcggctgtgcatt
ataaggtacacccatgctttgggcccaaactgtcccacctgtaaccaacacctgaaccca
tctcacttaatcaagccagcaaagttctttcttgcaaccctcagctctctccccctgctc
tgccccagtgaagaatgcagtgactgggtaagattggactctttcagggaacactgcctt
aaccattaccgcgaaaaagagtcccaggaagaacaaacaccttcagagcagaaccttgat
ggttacttgccggtcaacaaaggtgggcgtcctcgacagcacctgttgtcactgacccgt
cgggctcaaaaacacagactacgagacttgaagaaccaggtgaagacatttgccgaaaag
gaagaaggaggggatgtgaagtctgtgtgtttgacgctcttccttctggcattgagagct
gggaatgaacacaaacaagcagatgaactggaagcaatgatgcaaggcagaggatttggt
ctgcatcctgcagtgtgtttggccataagggtaaacaccttcctcagctgcagtcagtat
cacaagatgtaccgcacggtgaaagccactagtggccgccagatattccagcccctgcac
actctgcgtaatgcagagaaagagcttctccctgggttccaccaatttgagtggcagcct
gctttaaagaacgtttcgacctcctgggatgtgggcatcattgatggcctctctggttgg
acagtctctgttgatgacgtcccagcagacaccatctccagacgattccgttatgatgtg
gcattggtttctgcattaaaagaccttgaggaggacataatggaaggactgagagagagg
gcgctggatgacagcatgtgcacttctggctttactgtggtggtcaaagaatcatgtgat
ggcatgggagacgtcagcgagaagcacggatctggtcctgcagttcctgagaaggcagta
aggttttccttcacaattatgtccatctctattcgacttgaaggggaggacgatggcatc
accatcttccaggaacaaaagcccaactctgaactctcctgtagacctctgtgtctcatg
tttgtggacgagtctgaccatgagaccctgacagccatcttgggacctgtggtagcagaa
cggaaagccatgatggaaagtcggctcatcatttctgttggtggtttgctacgctctttt
aggttctttttccggggcacaggctatgatgagaagatggtacgtgaaatggaaggcctg
gaagcatcgggctctacttatatatgcacactttgtgactcaacacgtgctgaagcctct
caaaacatggtgctgcattccatcacacgaagccatgatgaaaatcttgagcgctatgag
atctggaggaaaaatcccttctcagagtcagcagacgaactgcgtgaccgagtcaaaggt
gtttctgctaagcctttcatggaaacccagcctactctggatgcactgcactgtgatatt
ggcaatgcgactgaattctacaaaatctttcaggatgagattggagaagtctaccagaag
cctaatccgagtcgagaggagcgccgccgttggcggtcaaccctggacaagcaactaaga
aagaaaatgaaactcaagcctgtgatgaggatgaatggaaactatgctcgtcggctgatg
acacgtgaagcggtggaggctgtttgtgagctggttccttctgaagaacgacgtgaggct
ctattgaaactgatggacctctacttgcagatgaagcctgtatggcggtcaacttgtccc
tccagagactgccctgaccaactctgtcaatacagctacaactctcagcaatttgctgac
cttctatcctccatgtttaagtatcgatatgatggaaaaatcaccaactacctccacaag
accttggcccatgttcctgaaatcgttgaaagagacgggtctatcggagcatgggccagt
gaagggaatgaatctggaaacaagctcttcaggcgttttcggaagatgaatgcaaggcag
tccaaaacattcgaacttgaagacatattaaaacaccactggctctacacttccaagtat
cttcagaagttcatggaggctcacaagaattcagtaaaagcaatgcaagccacattcaac
cctgaagagactccagaagaagctgataacagtcttgatgttccagatttttaa
DBGET
integrated database retrieval system
