Danio rerio (zebrafish): 321212
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Entry
321212 CDS
T01004
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain precursor
KO
K08131
collagen type IX alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
321212 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
321212 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
321212 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
dre00535
]
321212 (col9a2)
Proteoglycans [BR:
dre00535
]
Extracellular matrix (ECM) proteoglycans
Others
321212 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
321212
NCBI-ProteinID:
NP_997744
ZFIN:
ZDB-GENE-030131-9786
Ensembl:
ENSDARG00000024492
UniProt:
Q1LXU2
LinkDB
All DBs
Position
19:38422059..38467664
Genome browser
AA seq
691 aa
AA seq
DB search
MAEFFIVLRSLVLLQVLCLALSQVTGPPGAQGPAGSPGPAGTPGADGIDGEKGPPGPPGP
RGQKGESGEPGPDGPPGEDGIDGLIGAKGERGPRGNPGPKGQPGPRGPAGRPGPGLPGLP
GAAGPIGLPGQIGPTGPKGVMGSPGPSGLPGPPGKPGPPGKFLGLEEGSADFQCPTNCPP
GPKGPQGLQGVKGHKGRSGVLGDPGSIGKTGIKGEVGISGEQGIPGPPGPQGLRGYPGMV
GPKGETGPQGYKGILGPIGIPGRPGEEGPQGPPGEPGDKGDMGERGIRGPQGVVGKKGDN
GLPGIDGKDGTPGIPGIKGAAGQNGRPGAPGNQGDPGLPGMPGAKGEVGVKGETGPRGLM
GMQGSPGPQGEPGPPGEAGMEGVPGAKGDRGERGPVGPAGVIGLPGSKGERGPMGVPGAQ
GLTGTKGDKGFQGKVGSKGDVGDPGVEGLAGEKGEKGQSGEPGPKGQQGVTGDQGSNGPT
GDPGKPGDQGPAGLPGPRGLGGERGIPGMPGIQGPAGRDASDQHIIDVVLKMLQERLAAV
AMSAKRAVLGGAGVMGPPGPPGPPGPPGPQGPHGLTGGRGIPGIIGAPGQIGNTGLKGKR
GAKGERGDPGRPHPGQPGPPGLPGPPGLDGVARDGRPGERGPQGAAGEAGRPGKAGPPGL
PGFCEAAACLAASAYTSPRLQEAGTVKGPST
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgagttcttcatcgtcctcaggagtttggttctgctgcaggtcctctgcttggcc
ttatcgcaagtgaccggtccacccggagctcaaggccccgctggttcccctggtcctgct
ggaactcccggagccgacggcattgatggtgagaagggaccccctggacctcctggacca
agaggtcaaaagggagagtcgggtgagcctgggcctgatggacccccgggtgaagatggc
attgatggtttgattggggcgaaaggtgagaggggtcctcgtggtaatcctggaccaaag
ggtcagccagggcctagaggaccagcaggacgacctggacctggactgcctggacttcct
ggagcagcagggcccattgggcttcctggacaaattggacctacaggaccaaagggtgtc
atgggaagtcccggaccttcaggattaccaggacctccaggcaagcctggtccaccaggg
aagtttttgggtctagaggaaggcagcgccgactttcagtgtccaaccaactgtccaccg
ggaccaaagggtcctcagggcctgcagggagtcaagggacacaaaggtcgttctggggtg
ttgggagatccaggaagcatcggaaaaacgggtataaaaggtgaagttggcatctccggt
gaacaagggatcccaggccctccaggccctcagggtctgagagggtatccaggaatggtg
gggccaaaaggcgagacgggaccacaaggttataaaggaattttaggaccaatcggcatc
cctggacgccctggtgaagaaggaccccaaggaccacctggagagcctggtgacaaagga
gacatgggagagcgtggtatccgagggcctcagggagtggtcggaaagaagggagataat
ggacttccaggaattgatggaaaagatggcactcctggcatccccgggataaagggtgct
gcaggacaaaacggaagacctggagctcctggcaatcaaggagatcctggtttgcctggt
atgcctggagccaaaggtgaagtgggggttaagggtgagaccggaccccggggtttgatg
ggaatgcaaggatccccaggaccgcaaggagaacctggtcctccaggtgaagctggcatg
gagggagtcccgggggcaaagggtgacagaggtgaacgaggaccagtcggccctgctggg
gttattggtttgcctggcagtaaaggagaaagggggcccatgggggtcccaggagctcag
ggtctaactggaactaagggtgataagggattccaaggcaaagtgggatcaaaaggagac
gtcggtgatcccggtgtggagggattggctggggagaaaggagagaagggacagtctggg
gagcctgggcctaagggacagcaaggtgtgacaggtgatcaagggtccaatgggcctact
ggagatcccggtaaaccaggagaccagggtcccgcaggcttacctggcccacgtggcctt
ggtggagaaagaggaattccagggatgccaggaatacaaggaccagctggtcgtgatgct
tcagatcaacacatcattgacgtggttctgaagatgcttcaagagaggttagcagcagta
gcaatgagtgctaagagagccgtgctgggtggagcaggtgtaatgggacctcctggtcct
ccaggaccaccagggcctcctggaccgcaaggtcctcatggcctgacaggtggccgtggc
attcctggaatcattggtgccccaggccagataggaaacactgggctaaaagggaagagg
ggtgctaagggagaaaggggagatcctgggcgaccacatcctggacaaccaggaccacct
ggactgccaggtcctcctggtcttgatggtgtggcacgtgatggtaggccaggtgagcga
ggacctcagggggcagcaggtgaggcaggccgtcccggaaaggctggtcctcctggtctt
cctggattttgtgaagcagctgcttgtttggcagcctctgcctacacttctcccagacta
caagaagcgggaacagtgaagggcccgtccacttaa
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