Danio rerio (zebrafish): 321555
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Entry
321555 CDS
T01004
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
321555 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
321555 (prpf40a)
Spliceosome [BR:
dre03041
]
Complex A
U1 snRNP components
U1 related factors
321555 (prpf40a)
Complex B
321555 (prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
PTPlike_phytase
Glyco_hyd_101C
Motif
Other DBs
NCBI-GeneID:
321555
NCBI-ProteinID:
NP_938170
ZFIN:
ZDB-GENE-030131-274
Ensembl:
ENSDARG00000058467
UniProt:
Q7ZUE4
LinkDB
All DBs
Position
9:4675193..4721973
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AA seq
851 aa
AA seq
DB search
MMGPPGIPPHFPPMGMPPMGQRPPSLAPMPPGIMPPMMPPMGAPPIGQMPAMMPPMMPGM
MMPPRLPAASIQPTGPPGVSPVEAAAPAAPGTTSTTSTESSPDEQPKKKSVWTEHKSLDG
KIYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKE
LEDLEAMIKAEENGTADVVAPGTTPALTAQNESSVTVAPVAETEATMATGTIEEQPSHVP
AQVAEVSSDVAVNSTEETPSVETQPSNDVSKEERPELVKKVYKWNTKEEAKQAFKELLKE
KGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKET
FQRFLENHEKMTSTTRYKKAEQMFGDQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQL
RKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIR
ALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSAWMEMYPTISADIRF
SNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEINTGFEDFGSVISSD
KRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPEAT
WEGVRERFLKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRS
RSRSGSESEEDEYHTKKKKRSTSKSPSEHSSSGESERSYKKSKKHKKKGKKRRHKSGSPE
SEGERERKGREKDKDKENDKSRAKLRGESKQKSPKRKSAKEEGGWDTSGSELSEGELEKR
RRTLLEQLDAP
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgatggggccaccaggaatcccgcctcacttccctccaatgggaatgccacccatgggc
cagaggccgcccagcctggcccccatgcccccgggaataatgccacccatgatgcctcca
atgggcgctccaccaattggacagatgccagccatgatgccaccaatgatgcctggaatg
atgatgccacctcgtctgccagctgcatcaatccagcctacaggaccgcctggtgtaagt
ccagtggaggctgcagctccggctgctcctggaacaaccagcaccacatcaaccgagtct
tcacctgatgaacagccaaaaaagaagtcagtgtggaccgagcacaaatctctggatgga
aaaatatactactacaacacagagaccaaacaatccacctgggagaaaccagatgaactc
aaatcacccgcagagcaaatgttgtcaaaatgcccatggaaagagtataagtcagacacc
ggaaagccctattactataactcccagaccaaagagtctcgctggactaaacccaaagaa
ctggaggacctggaagcgatgataaaggcagaggaaaatgggacggctgatgttgtggct
cctggcaccacccctgctctcacagctcagaatgagtcttctgttactgtggcgccggtt
gctgagacggaggctaccatggcgacgggcaccatcgaggaacagccttctcacgtgcct
gcacaggttgctgaggtcagcagtgacgtcgctgtgaactccactgaggaaacgcccagc
gtggagacccagcctagcaatgacgtttcaaaggaggagagacctgagctggtgaagaaa
gtttacaagtggaatacaaaagaggaggcgaagcaggcctttaaagaactcctgaaagaa
aagggcgtttcttccaatgcatcatgggagcaggcaatgaagctgataattaatgaccct
cgttacagtgctctgccaaagctcagtgagaagaaacaggcgttcaatgcttataaagtc
cagacagagaaagaggaaaaggaagaagccagaataaaatacaaggagtctaaagagact
ttccaacgcttcctggagaaccacgagaagatgacgtcaaccacacgatacaagaaagca
gagcagatgtttggagatcaagaggtttggtcgtgtgttccagagagagaccggctggag
atctatgaagatgtgctcttttatttggcaaagaaagagaaggaacaagctaaacagctg
aggaagaggaactgggaagcactgaagaacattctggacaatatggccaatgtgacgtac
agaacaacgtggtctgaggcgcaacagtacctgctggacaatccaacatttgctgaagac
gaggagctacagaacatggacaaggaagatgcgctgatctgttttgaggaacacatccgt
gctcttgagaaagaggaagaagatgagaagcagaaaactctgctgcgcgagagacgtcga
cagcgcaagaacagagagtcttttcagaaattcctggatgagcttcatgatcatgggcag
ctgcactccatgtctgcctggatggagatgtacccaaccatcagtgccgatattcgcttc
agcaacatgctgggccagccaggctccacgcctctggacttatttaagttttatgtggag
gatctgaaagctcgttaccatgatgagaagagaatcattaaagacatcctgaaggataaa
ggtttcctggtggagatcaacacaggctttgaggactttggctcagtgatcagctctgat
aaacgcgccaccacgcttgatgcgggaaacatcaaactggccttcaacagtttgcttgag
aaggctgaagcacgagagcgggaaagagaaaaagaggaggccagaaagatgaagaggaag
gaagcggcatttaagagcatgttaaaacaggccacaccccctctagagcccgaggccacg
tgggagggagtacgagagcgcttcctaaaagagcctgcttttgaagacatcacgctggag
tccgagaggaagagaatattcaaagacttcatgcatgttctagagcacgagtgtcagcat
catcactccaagacgaaaaaacactccaagaaatccaagaaacaccacaggaaacgttcc
cgatctcgatcaggctcggagtcagaggaagatgagtatcacacgaagaagaagaaacgt
tcaacatctaaatctccatctgagcactcgtcctctggggagtcagagagaagttataag
aaatcgaagaaacacaagaagaagggaaagaaaagacgacacaagtctggttcccctgag
tctgaaggagagagagagcggaaaggaagagagaaggacaaagataaagagaacgacaaa
tccagagccaagctgcgtggagaatccaaacagaaatcccccaaaagaaagagtgctaaa
gaagagggtggatgggatacgtctggcagtgaactgagtgaaggagagctggagaagagg
cggcgcacacttctagagcagctggatgctccgtaa
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