Danio rerio (zebrafish): 321940
Help
Entry
321940 CDS
T01004
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03008
Ribosome biogenesis in eukaryotes
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
321940 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
321940 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
321940 (xrn2)
03019 Messenger RNA biogenesis [BR:
dre03019
]
321940 (xrn2)
03009 Ribosome biogenesis [BR:
dre03009
]
321940 (xrn2)
03016 Transfer RNA biogenesis [BR:
dre03016
]
321940 (xrn2)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
321940 (xrn2)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
321940 (xrn2)
Ribosome biogenesis [BR:
dre03009
]
Eukaryotic type
Pre-60S particles
RNases
321940 (xrn2)
Transfer RNA biogenesis [BR:
dre03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
321940 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
321940
NCBI-ProteinID:
NP_001001944
ZFIN:
ZDB-GENE-040426-2874
Ensembl:
ENSDARG00000101900
UniProt:
A0A0R4ISJ3
LinkDB
All DBs
Position
20:complement(51915140..52003326)
Genome browser
AA seq
952 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCLEEKAKEYNGVKIPVDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELAEEKQKMREEVIERGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLTNDPGWRNITVFLSDASVPGEGEHKIMDYIRRQRGQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCSQMGHEIKDCQGLPREKQGEHDEFADTIPVSEQE
FIFIRLAVLREYLERELTMASLPFPFSFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKEDDESFKRRMKD
KKKRMKAEQRPSFLPGGQFAPHALGGRDRPMAVQNARHAAFEMRMQGNQRNQDAAQSLRA
MMRNGKGSAESSGSMDNRGVKRKADDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDATDD
EFRKKVVQSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKGMFSDFEKGTKPF
KPLEQLMGVFPAASGNFLPTTWRALMSDPESSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLRAALAEVYNDLTPEEVRRNSLGSDVMFVGRSHALCDFIQELYRAESHTATEIPA
EFCHGIQGILNLDEDPILPDKLVESPIPVLRDISSNCAIGIKFKDPQYADGFVFKAVILP
GAKIPNKVLKPGDWEQSNRGPWRPQLGFNPNRQQAHLDQSAFRKLNHHVGRSDGPGIYGS
GPPSDAHRRGGAYSSAPPPTNYHQGNYRPPQRDHYSQSQSQYSRQPHMNTGSYPRFQQGS
HGWDRAMQNQGSSYQQNQQRGRGDWRPQQNQQGFNSGRGYGLPPASRRYNWN
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcgtttttccgctggttgagtcggaagtatccgtcgataattgtgcac
tgcctggaagagaaggccaaggagtacaatggcgttaaaatcccagttgataccagcaaa
cccaacccaaatgaagtggagtttgacaacctgtatctggacatgaacggaattatccat
ccatgcacacatcctgaggacaagccagcaccaaaaaatgaagatgagatgatggttgcc
atttttgaatatatcgaccgtctctttaacatcgttcgaccaagacgggttctgtatatg
gcaattgatggtgtggctcctcgagctaaaatgaaccaacagcgttccagacgtttccgg
gcgtctaaggaaggagtggagcttgcggaagagaaacaaaaaatgagagaagaagtgatt
gagagaggtggctaccttccacctgaggaaattaaagagcgttttgacagtaactgtatc
acacctgggaccgagttcatggataacctggccaaatgtctgcgatattatgttgcagac
agactgaccaatgaccctggatggcgcaatataacagttttcctgtcggatgccagcgtt
cctggtgaaggagagcataaaattatggattacatcaggagacagagaggtcagccaaat
catgacccaaacacgcatcactgtctctgcggagctgatgctgatttgattatgctgggt
ctggcaacacatgaacccaacttcaccattataagagaagagtttaaacctaacaaaccc
agaccctgtgctctttgtagtcaaatgggccacgagattaaagactgtcagggtttgcca
agagaaaaacagggcgagcatgatgagtttgcagacaccattccagtatccgaacaggag
ttcatattcatccgactggctgtgttacgagagtatctggagagggagttgacaatggcc
agtctgccgttcccgtttagctttgagcggagcgtcgacgactgggtgttcatgtgtttc
tttgtgggaaatgacttcttgccccacttaccgtctcttgagatcagagagggcgccatc
gatcgtctggttggcatctacaaagatgttgtgcataaaactgggggctacttaacagaa
aacggctttgtcaatctggagcgtgttgagctcattatgcaagccgtaggggtggcggag
gacaacatcttcaaaaagcgcaaggaagatgacgagagttttaaacggagaatgaaggat
aagaagaaacggatgaaagcagagcagcgtccatcatttctccctgggggtcagtttgct
cctcacgctctgggtggcagagatcggccaatggcagtgcagaacgccagacatgcagca
ttcgaaatgaggatgcagggaaaccagcgcaatcaggatgccgctcagtccttgagagcc
atgatgagaaatgggaagggttctgctgaatccagtggcagcatggacaatcgcggtgta
aagcgtaaagctgacgacagcgacagcgaaccagagccagaagataatgtcaggttatgg
gaggacggctggaagcagcgttactacaaaactaaattcgacgtggatgcgacggacgac
gagtttcgtaagaaagtggtgcagtcgtacgtggagggcctgtgctgggtgctccgctac
tactatcagggttgcgcatcctggaagtggtattttccctttcattatgctccgtttgcc
tccgacttcaaagacatcaagggcatgttcagtgatttcgagaaagggaccaaaccgttt
aaacccctggagcagctgatgggtgtgtttcctgccgccagcggaaacttcctgcccaca
acctggagagctctgatgtcagacccagaatcctccattattgatttctaccctgatgac
tttgccattgatctgaatgggaagaagtacgcctggcagggtgttgctttgttaccgttt
gtggatgagcggaggttacgggccgcattagcagaggtctacaatgacctgaccccagag
gaagtgaggaggaacagtttggggagtgatgtgatgtttgtgggaaggtctcacgctctt
tgtgatttcatccaggagctctaccgtgcagaatctcatacggccactgagatccctgca
gagttttgtcatggaatccaaggtatattaaatcttgatgaagaccctattctaccagat
aaactagtggagtctccaatcccagtgctgagagacatcagtagcaactgcgctattgga
atcaaattcaaggatccgcagtatgccgatggctttgtgttcaaggctgttatcctgcca
ggggctaagatccctaataaggtactgaaaccaggtgactgggagcaaagtaaccgcggc
ccatggagaccacagctgggattcaatccaaaccgccaacaagcccatctggaccaatca
gctttcagaaaactcaatcaccatgtgggcagaagtgatgggccgggtatctatggctcc
ggtccgccttctgatgctcatcgtaggggtggagcttacagcagtgccccgccccccaca
aactatcaccaaggaaactaccgtccccctcaaagagaccactactctcagagccagagc
cagtactccagacagcctcacatgaacactgggtcatatcccaggttccagcagggatct
catggttgggatcgagccatgcagaaccagggctcttcataccagcagaaccagcagagg
ggacgaggagactggagaccccaacaaaaccagcagggcttcaattctggacgtgggtat
ggattgcctccagcctcacgaagatacaactggaactaa
DBGET
integrated database retrieval system
