Danio rerio (zebrafish): 323561
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Entry
323561 CDS
T01004
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain precursor
KO
K06237
collagen type IV alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04382
Cornified envelope formation
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
323561 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
323561 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
323561 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
323561 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dre04147
]
323561 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
dre00536
]
323561 (col4a5)
Exosome [BR:
dre04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
323561 (col4a5)
Glycosaminoglycan binding proteins [BR:
dre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
323561 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
323561
NCBI-ProteinID:
NP_001116702
ZFIN:
ZDB-GENE-030131-2281
Ensembl:
ENSDARG00000052063
UniProt:
A0A8N7UYU7
LinkDB
All DBs
Position
7:51103232..51194430
Genome browser
AA seq
1659 aa
AA seq
DB search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NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaaaaagtctcggcgcggtgttgctgcttgtgctcactctgagtgcgggagta
gagaaatccgagagtgcggcatgtcatggttgtgggactggatcaaaatgtgactgcagt
tcagtgaaaggagtgaagggagatcgaggacttccgggtttaaagggtcagccgggtgtt
ccaggtttcccaggaccagagggaccaatgggacctcgtggagagaaaggtgatgacgga
cctcaagggtcgataggccccaaaggaataagaggacctccaggattacctggattttca
ggaacaccaggaatcccaggtcttccaggacaggatggtgctccaggacccagaggaatt
ccaggctgtaatggaactaaaggtgaaagaggattccctggaaatccaggtcgctcaggt
ttagatggtcaaccaggtccaccaggtcttataggacaaaaagcaaaacctggggaagtc
atcgacattaaccgcatttcagaaaatggacttccaggctttaatggctttacaggcaga
aggggtgatcccggacccccaggtcttcaagggcctatcggtcctcctggtccaaaaggg
tttgagggtcgcccaggccctcctggtccaccgggaccaaaaggaaacatgggattgaat
ttccaaggacccaaaggagagaagggtgaccgtggattaaaaggacctccagggccacca
ggacaagttggtgaagtgtcaggttcaccagatacagtcattcaacaaggagaaaagggt
gatcgtggcatacctggagatactggtttcccagggccccctggaccccctggtccacaa
ggaggtcagaaaggagagaaaggagaacctggggaggctggaaagaggggaaaacctggc
aaagatggtgaaccaggtcttcttggatatccgggtgataaaggagaccaagggcctcct
ggtctgcctggacgagatggttttagaggtgagaaaggtgatcaagggccacctggacct
ccctcctaccggggtgatcagttcacaggtgtaggtggaataggaccaaaaggagaccgt
ggtgatccaggaccctctggtattaaaggagacagaggactaccaggtattcaggggcca
cctggtccacagggtcctccaggaattggaggtccaggacctcccggttcacaaggattg
cctggagaacgaggagaaaagggtgatgagggacagcctggaatctcacttcctggacca
cccgggagacccggaccaacaggaccacaaggaatacaaggaccacctggccccccagga
ccattcaacagtgatgtagaatgtaatcgtggtcttcctggtcctccaggcctgcagggg
gagcgtgggtttactggagatagtgggcagaaaggtcaaaaaggcgagacttgtgtgaat
tgtttctccaatggaaaccctgtcccaggaccccaaggttttccaggtcctcctggaagt
ccaggtgctcctggggcgtctggatctaaaggagacaggggatatccgggaggaccaggg
cttatgggcccacctggaatacctggacctcagggttcccctggactccctggagagaag
ggtgacccaggcgataccctctctgttcttggcgtgaagggagataaaggagacacaggt
tttcctggctctccaggtctgccgggactcgaaggaagacctggacgtgatggagtgcct
ggtccacctggcctcagaggaccacctggtttgggactgaaaggtacacaaggtcccaac
ggtgaacctggtttgccaggacctcctggagacagaggtttaccaggttccccaggattt
ggtcctcaaggaccttctggagaaaaaggtattcagggtgtttcaggaagaccaggggca
cctggactaccaggtcagaaaggtgaacctgggatgactgtgccagaagttggtgaacgt
ggacccccaggacaggatggagatcctggttcacaaggacgtccaggtgattcaggccca
cctggacagcctgggttcccaggtttgcctggatccaaaggagagcctggtcttcctggt
attggtttgccaggacctcctggtgctaaaggatttcctggtattgctggttcccctggt
ggacctggcattcctggacgaccaggtttagatggactgcctggtcagcctggattacct
ggatccaaaggagatcctggttatggtctgcctggtcctccaggtcccacaggatcacca
ggcattaaaggtggacccggtccgaaaggtgattctggtttccctggaagccctggtcaa
ccaggccgcccaggtctcgatggggctcctggacctaaaggtgatgctggttttcctggt
ggtcctggtcctcgtggcccccctggggctcctgcttttggtcttcagggccctcctggt
cctcctggagctccaggctctattggatctcctggagtaccgggggcgaatggagaaaaa
ggagacagaggccctccaggtctgagtactccaggcttccagggtgatagaggaatttct
ggacttcctggacctcctggtccagttggtccacctggagttccaggccgacctggacaa
gatggcctaccaggactccctggatctaagggagaaatgggctcaatggggcctcccgga
tcaaaagggaaccccggcaaccctggagctcccggctttccaggaccaaaaggagatgat
ggtgtcccaggacagtcaggaaatccaggttttccagggttaaaaggagacaaaggtgaa
acaggcattcaaggcccgcctggcataaccacatctacaagtgtactgaaaggacaaaaa
ggagaatctggtgttccaggtttcagtggaccgccaggaccaaagggtattacaggtatc
tctggagatcctggtctgcctgggcaagatggacgaccaggactaccaggacccccaggc
cccaaaggtgatgctggtctcccaggaattccaggttctccaggagccacaggattaaag
ggggccatgggagagatgggattgccaggagttcctggagtcaaaggaaattccggccaa
cctggccaacctggccagccaggatccccaggtggaccaggattcccaggacctaaaggt
gaagctggtgtaccaggatacggattacctggaaatcccggacctaagggtgaaccaggc
actccaggctttcctggacccgctggcttgaaaggccagcctggctttccaggacctcaa
ggcttgactggtagccctggaccaaagggtgatccgggactcccaggatttcaaggtgca
cctggcaatcctggcccaaaaggtttggatggtgctccaggccctgcaggtttaaatgga
gcacctggtaggccaggagatcccggacgatctggattacctggtatccctggagataaa
ggtcttgctggtcgtgatggtattccaggaccagcaggtcaaaagggtgaaccaggcttg
cctggtcaacctggtttgaaaggcgctaaaggagatcctggttttccgggtcctgccggt
agtgctggatttcctggtccaaagggtgatgcaggatttcctggcttgcctggtcagatt
ggttctgtaggaccacctgggcctccaggcttgccactgcagggacctaaaggtatccaa
ggtccacctggtccccccggaagagctggtagcggaggagtgaagggtgagaagggtttg
cctggagttcctgggacgcctggagaagcaggacagaaaggagattatggttctcctggg
tttccgggctccccagggagtccaggaccaaatggcctcaaaggagatcctggacctcaa
ggtgttcctggttttccaggatctaaaggagtgtctggtccacctggtatttctggcctc
cctggagcacgtggtgatcctggagataaaggacctcccggacccccaggttatgctgca
gagcctattgtcttgaagggcgagcgtggcccaccaggacctccaggtaatccaggcggc
agaggacaagccggacccatcggattgcagggactcccaggttcgcctggcagctctgga
gacccaggaccaatgggacctccaggatttaatggcccacctggaaggaagggagacaca
ggtccagctggacagccaggtcagcgtggttaccccggccctccaggtccagatggggct
ccggggcctccaggtatcacgggaactttgtctggtgcacacggttttctgatcacacgc
cacagtcagaccatagaagtgccatcgtgtcctgatggcacaagcccaatctacgagggc
tactctttactctacgtgcaaggcaacgagcgggcacacggtcaagatctgggtacggct
ggcagctgtctacggcgtttcagcacgatgcctttcatgttctgcaacatcaacaatgtc
tgtaacttcgcttcccgtaatgattactcatactggctgtccacaccacagcccatgccc
atgaccatggcacccatcactggagagaacatcaaaccttacatcagccggtgttctgtg
tgtgaagctccagcaatggtgattgctgtacacagtcagaccattcagttgccagcgtgc
cctgaaaactgggataccctctggatcggttactccttcatgatgcacaccagtgcaggt
gctgagggttcaggtcaggctctggcctctccgggctcctgtctggaggagtttcgctcc
gctcccttcattgagtgccacggacgaggaacctgcaattattacggcaactcctacagc
ttctggctggccactgtggacgtgaacgaaatgttcagaaagccgcagtcagagactcta
aaagctggaaacttgaggacccgcgtgagccgctgtgtggtgtgtatgaagaggacgtaa
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integrated database retrieval system
