Danio rerio (zebrafish): 323865
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Entry
323865 CDS
T01004
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03008
Ribosome biogenesis in eukaryotes
dre03013
Nucleocytoplasmic transport
dre03015
mRNA surveillance pathway
dre05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
323865 (nxf1b)
03015 mRNA surveillance pathway
323865 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
323865 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
323865 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
323865 (nxf1b)
03009 Ribosome biogenesis [BR:
dre03009
]
323865 (nxf1b)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
323865 (nxf1b)
mRNA cycle factors
Stress granule specific factors
323865 (nxf1b)
Ribosome biogenesis [BR:
dre03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
323865 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_9
LRR_4
Motif
Other DBs
NCBI-GeneID:
323865
NCBI-ProteinID:
XP_001923961
ZFIN:
ZDB-GENE-030131-2585
Ensembl:
ENSDARG00000055076
UniProt:
F1Q7H6
LinkDB
All DBs
Position
21:complement(29741843..29754756)
Genome browser
AA seq
645 aa
AA seq
DB search
MATADDSRYYNEHDDRVGGPKHRNRKGRGPFRAPLYSDQMSRPRHRGGHSGGGGGGGGGG
GPGPRSRLHDDDGDVTMSDIPQDSSQRRYNPYGRQQNRRDDRNRKGGRGGGGNDDRGGNR
FGGRGGGGGGGGGGGLSDGRSKNWFKMTIPYGKKYDKDWLLSSLQSVCPIPFHAVQYHLD
GNRAQFYVEDSTTANAIFKVSRRITDKDGYKVAVIMNSCPPPTLIHSDLKPADLEHLKQC
MAKRFDGSQQALDLNNIRVDPDLVSQNIEVTLNRKNSMCAVIKIIEENIPELVCLNLSNN
RLFRLDDLVDIIHKVPNLKILNLSHNELKTERELDKLKGLKLVDLSLEGNPLCHHFKIHA
DYISAIRERFPKLLKLDGHDLPPPIGFDLDDGPSTLPPSKASYFCSEEIKNIILCFLQQF
YNIYDSGNRQPLLDAYHDGATFSLSIPFVSLNPSKSTLGEYQKDSRNIKRMKDPTTRYRL
IKHTRLNVVAFLNELPKTQHDIASFVVDVNTYTATLLAFTVCGVFKEMDGKSRETYRAFS
RVFIAVPAGSTGLCIVNDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAHQQEMLAAF
SLKSGMNLEWSQKCLQDNDWDFERAAQIFTGLKAQGKIPDVAFVK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcagacgactcgcgctactataatgagcatgatgaccgtgttggtggacca
aagcatcgcaaccgtaaaggcagaggccctttcagagcccccttgtacagtgatcagatg
tctcgtccaaggcatcgaggaggtcacagcgggggaggtggaggaggaggaggaggtggc
ggccctggcccccggtcaagacttcatgatgatgatggagacgtgaccatgtctgacatc
cctcaagacagctcgcagcgcagatataatccatatggcagacaacaaaaccgtcgtgat
gaccgcaatcgcaaaggtggaagaggaggtggtggaaatgacgatagaggtggcaaccga
tttggaggcagaggaggaggaggaggagggggcggcggtggaggactatctgatggaaga
agcaagaactggtttaaaatgacgattccttatgggaagaaatacgataaagactggctt
ctttcttcacttcagagtgtctgtcccataccattccatgccgttcaatatcatctggat
gggaacagggcccagttttatgttgaagactctacaaccgctaacgctatatttaaagtt
tcacgtagaataacggacaaagatggatataaggtggctgttatcatgaacagctgcccc
ccacccactttaattcactctgatctgaagcctgcagatcttgagcatttgaagcaatgc
atggccaaacgatttgatggatcacagcaggctcttgacctgaacaacatcagggtcgat
ccagatttggtttcacaaaatattgaggttaccttgaaccggaaaaactccatgtgtgcg
gtcattaagattattgaggaaaacattcctgagctggtttgtctaaacctaagtaataac
cggttattcaggctggatgacctggtggatattatccacaaagttcccaacctaaaaatt
ctcaatctgtcacacaatgagctgaagacagaaagagaacttgataagctaaagggtttg
aagctggtggatctctcactggagggaaatcctttgtgtcaccatttcaagatccatgct
gactacatcagtgccattcgggaacgattccccaagctgctcaaactggatggacatgac
cttccacctcctattggttttgacttggatgatggtccatccactcttccaccttccaag
gcaagctacttctgctctgaggaaatcaagaacatcatcctttgtttcctgcaacagttt
tacaacatatatgactctggaaacagacagccactgctggacgcctatcatgacggagcc
actttctcccttagcattcccttcgtttccctgaacccctcaaaaagtactttaggggag
tatcagaaagacagtcgcaatatcaagcgcatgaaagaccctacaacacggtaccgtttg
atcaaacacacacgattgaatgtggtggctttcctgaatgaacttcccaaaacacaacat
gacatcgcctcatttgtcgttgatgtcaacacctacacggctacactgttggcattcaca
gtctgtggagttttcaaagaaatggatggaaagtccagagagacctacagagccttttcc
cgggtgttcatcgctgttcctgcaggaagcactggtctgtgtattgtgaatgacgagctg
ttcgttcgaaacgccacaacggaggagattcgccgcgcattcgtcgctccagcacccacg
ccatccagcagtcctgtgcccactctgtctgcccaccaacaagaaatgcttgctgccttc
tcactgaaatccggaatgaacctcgagtggtctcaaaagtgcctacaagataatgattgg
gattttgaaagagccgctcagatcttcacaggcctcaaggcacaaggaaagatcccagat
gttgcgtttgtgaaatga
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integrated database retrieval system
