Danio rerio (zebrafish): 324267
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Entry
324267 CDS
T01004
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
324267 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
324267 (hbs1l)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
324267 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
PRT_C
Motif
Other DBs
NCBI-GeneID:
324267
NCBI-ProteinID:
NP_001295477
ZFIN:
ZDB-GENE-030131-2987
Ensembl:
ENSDARG00000036778
UniProt:
F1Q5Z6
LinkDB
All DBs
Position
23:complement(34709916..34752833)
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AA seq
682 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATAAQFIYSRQDSRQARHVETVEEAE
YEEEEEEMPTSPTMTSTLDSLQQGRLYSCLDQMRTVLGDSIPDSTLTQAALKYDCDPHRA
LDFILSENTNTQAPSARTNPQLEPNTTAAPQKAKVREAPESRVESEVVPKVARMTVSGKK
QTMGFDVRSAEENGGVAPSLRRGPSPEATAVPTTETPSKQSTVTEDSAAPTPTRPSGKSK
QQLNIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQEAKKA
GKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVVTLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNWQQERFQEII
SKLGHFLKQAGFKDSDVFYVPTSGLSGENLTTKSKVADLTAWYTGPCLVEQIDAFKPPQR
SVEKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDKVLAMPPNETCTVKGISLHDEALD
WAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRACTRFRARILLFNIELPITQGFPVLL
HYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGQNAVVEIQTQRPVAMELYKDYKEL
GRFMLRYVGSTIAAGVVTEIKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccacaggaatgtccgaggttataactacgacgaagactttgaagatgatgac
atgtatggacagtcagtggaagatgactattgcatctctccagccactgccgcacagttt
atctattcgcgtcaagattcgaggcaagctcggcatgtggagactgtggaggaggcagag
tatgaagaggaagaagaggagatgccaacctctcccaccatgacaagcacactagattca
ctacaacaaggccggttgtattcctgtttggatcagatgaggaccgtactgggagactca
attccagactccacattgactcaggcagctcttaaatatgactgtgatcctcaccgagcc
cttgatttcattctgagcgagaacaccaatacacaagccccttctgccagaaccaaccca
cagctggagcctaacaccacagctgcaccacagaaagctaaagtacgggaggctccagag
agtcgcgttgaatcggaggtcgtcccaaaggttgcccgaatgactgtgtcgggtaaaaag
cagacaatgggctttgatgtgcgaagtgcagaggaaaatggcggagtggctccttcgctt
cgcagagggccgagtccagaggccactgctgtaccaaccacagaaaccccatccaaacag
tcgactgtgactgaagattctgctgctccgaccccaactcgaccatccggaaaaagcaaa
cagcagctcaacatccgtgctgaactggagaagagacaaggaggaaaaccattactcaac
ctggtggtcataggacatgtagatgctggcaagagcactctcatgggtcatctgttatat
ctgctggggaacgttaacaagagaaccatgcataagtatgaacaggaggccaaaaaagct
ggcaaagcctcattcgcctatgcatgggtactggatgagacaggagaggaaagggacaga
ggagtgaccatggatgtgggcatgactaagtttgagactgactcaaaggttgttactctg
atggacgcaccaggacacaaagacttcatcccgaacatgatcacaggggcagcacaggca
gatgtggcagtgttggtggtagatgccagccgtggggagtttgaggccgggtttgaggca
ggagggcagacccgcgaacacgctctgctggttcgatccctcggagtcactcagcttgct
gttgctgtcaacaagatggaccaggtgaactggcagcaggagaggtttcaggaaatcatc
tccaagctcggccactttctgaagcaggctggttttaaggattctgatgtgttttacgtc
ccaactagcggcctatcaggagagaatctaaccactaagagtaaagtagcagaccttaca
gcctggtacactggaccatgcctggtggaacaaatagatgcttttaaacctccccagcgg
tcagtggagaagcccttcaggctctgtgtgtcagacgtctttaaagatcagggctctggg
ttctgtgtgactggaaagattgaggctggctacattcagactggagataaagtgcttgcc
atgccgcctaatgagacctgcactgttaaagggatcagtcttcatgatgaagcattagac
tgggcagcggctggtgatcatgtcagtctgactgtaacaggcatggacatcatcaaaata
aatgttggatgtgtattctgtgatcccaaagagcccattagagcctgcacgcgattcaga
gcaagaatcctcctctttaatattgaacttcccatcactcaaggcttccccgtcctgttg
cattatcagactgtaagtgaaccggccaccattaggaagttagtcagtgtattacacaag
agcagtggagaagttctcaagaaaaaaccaaagtgtttgagtaaaggacagaatgcagtg
gtggagattcagacacagagacctgtggctatggagctttataaggactataaagaactg
gggcggttcatgctgagatacgtgggctccaccatcgctgcaggagtggtcacagagatc
aaagagtaa
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