Danio rerio (zebrafish): 324554
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Entry
324554 CDS
T01004
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
324554 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
324554 (cpsf3)
03019 Messenger RNA biogenesis [BR:
dre03019
]
324554 (cpsf3)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
324554 (cpsf3)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
324554 (cpsf3)
U7-dependent histone pre-mRNA processing factors
324554 (cpsf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
324554
NCBI-ProteinID:
NP_001003836
ZFIN:
ZDB-GENE-030131-3275
Ensembl:
ENSDARG00000027649
UniProt:
A0A8M1N1T9
Q6DRG6
LinkDB
All DBs
Position
20:complement(32365146..32380236)
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMVDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCSQGQRVSGILVKKNFSYHILSPSDLSNYTDLAMSTVKQTQAIPFTGPFPLLLSQLRHL
TGDVEEIEMSEKSTVKVFNSITVIHENNLVVLEWFANPLNDMYADAVTTVVLEVQSNPKA
QKALQPQEKKVDVNVFQNRLLKMFQDMFGEECVDFKDKNCLAVNVDEKTAFIDLETRTVE
YEEPNPEDDSLREMLELAVQRLYEAINPVL
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaaacgtaaagccgatgtaccagtgcctgcggaagagagtgatcagctcctc
atcagaccgctaggagctgggcaggaggttgggaggtcctgtatcatcctggagttcaaa
ggccgcaaaatcatgctggactgtggcatccaccctggactggagggcatggatgcattg
ccttacattgatttaatagacccagctgagattgacctgctgctcatcagccattttcac
ttggatcattgtggagctttaccatggtttttacagaagacaagtttcaaagggaggaca
ttcatgacccatgccaccaaagccatctaccgctggttactttcagactatgtcaaagtc
agcaatatctcagctgacgacatgctgtacaccgagactgatctagaagaaagcatggac
aagatagaaaccatcaacttccatgaagtgaaagaggtggccggcatcaagttttggtgt
tatcatgcagggcatgttttgggagcagccatgttcatgattgagattgcaggagtgaag
ctgctgtacaccggtgatttctcacgccaagaagaccgacatctcatggctgctgagatt
cccagcgtcaaaccagacattctcattactgagtccacatatggtacacacatccatgag
aagcgagaggagagagaggctcgtttctgtaacacagtccatgacatagtgaaccgtgag
ggccgctgcctcatccccgtgtttgctttgggccgagcccaggagctgcttctcattcta
gatgaatactggcagaatcatcctgagctccatgacattcctatttactatgcttcgtct
ctggctaagaagtgcatggctgtgtatcagacctatgtgaatgcaatgaatgacaagatc
cgcaaggccatcaatattaataaccctttcgtctttaagcatatcagcaatctcaagagc
atggaccatttcgatgacatcggcccaagtgtagtgatggcatctccaggtatgatgcag
agtggcctctccagagagctgtttgagagctggtgcacagacaagaggaacggcgtcatc
atagcgggttactgtgtggaaggaacactcgcaaagcatatcatgtctgagcctgaggag
atcaccaccatgtctggacagaagcttccgctgaagatgtcagtggattacatctcattc
tctgctcatacagactaccagcagaccagcgagttcatccgagctctgaaacctcctcat
gtgattttggttcatggagagcagaatgaaatggctcggttgaaggctgcgctgatccga
gagtatgaggacaatgatgaggttcacattgaggtgcacaatcctcgaaacacagaggcc
gtcacactcaacttcagaggagagaaactggccaaggtgatgggctctcttgcggataag
aagtgttcacagggtcagagagtctccgggatcctggtgaaaaagaacttcagttaccac
atcctctctccttctgacctctctaattacactgatcttgccatgagcacggtgaaacag
actcaagccattcccttcactggcccttttcccttgctgttgagtcagttacgtcacctg
acaggtgatgtagaggagattgagatgtcagagaagagcacagtgaaagtctttaacagc
atcacagtgattcatgagaacaacttggtggttttggagtggtttgccaatcctctgaat
gacatgtacgccgatgccgtcaccacagtggttctggaagtgcagtcaaaccccaaagct
cagaaagctcttcagccccaagaaaagaaagtggatgtaaatgtttttcagaatagacta
ctgaaaatgttccaagacatgtttggagaggagtgtgtcgactttaaagacaagaactgt
ctcgccgtgaatgtagatgagaagacggccttcattgacctggaaacaagaacggtggag
tatgaagagcccaatcctgaagatgattctctcagagaaatgctggagctcgccgtacag
aggctgtatgaagccataaacccagtgttgtga
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integrated database retrieval system
