Danio rerio (zebrafish): 325064
Help
Entry
325064 CDS
T01004
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog isoform X3
KO
K13174
THO complex subunit 5
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03013
Nucleocytoplasmic transport
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
325064 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
325064 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
325064 (thoc5)
03041 Spliceosome [BR:
dre03041
]
325064 (thoc5)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
325064 (thoc5)
Spliceosome [BR:
dre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
325064 (thoc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Pyr_redox_dim
DUF2542
Motif
Other DBs
NCBI-GeneID:
325064
NCBI-ProteinID:
XP_021326128
ZFIN:
ZDB-GENE-030131-3789
Ensembl:
ENSDARG00000038290
UniProt:
A0ACD6B6K8
LinkDB
All DBs
Position
25:4378619..4405841
Genome browser
AA seq
684 aa
AA seq
DB search
MSSDAVKKRKPKVIRSETGTPETKRGRAESEQDVRVYNEEVELEGRDPQQDYTLYKETCA
ALAKLMSEIQELKTSGAKDGSAEIELRRKQSSIHFITLKKLNRLAHMRLKKGRDQTHEAK
QRVDVLHLQLQNLLYEVMHLQKEIGKCLEFKSQHEEIELVSEDEFFQDAPAEISRPQVTR
EDHHQLTLARLDWELEQRKRLAEQYKTSLSSKEKIQKAIEQKREYLSSLQPGLHNIMQAS
LPVQEYLSMPFEHMQKQAEVARHLPPPLYVLFVQAGAYGQACDKNLTVSIRGDVDEAKAL
SRPPEDSQDDESDSDAEEEQQNTKRRRPTVGVQLDDKRKEMLRRHPLSLGIDLKCKDGSV
LHLYFYYLMNLNILTVKTKVSTSVDLSGAISAGELLNSESLLNCLYASDHGNETPNPANR
YQFDKVGITTFADYVSDLGHPYVWVQKLSGLQFSSDAAQSELSGSALSASHMEKSMKLLR
GRLQSRLALHKQFSSLEHSIVPVSSECQHLFPAKVVSGLTRWTMMSHQEFTELSFVQHVL
KAGLVSETDLFFKAVVERGTARLLAAVVVNPRYPEVTPLFSLSLLWKGERSGRTDDNLRA
MESEVNVFRVELQGPRPGLQLLTNQIQRLCMCLDVYLETESQVSDGSEGPKEFPREKMCL
RTARGPSRLKPFKYNHPQGFFSHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatgctgtgaagaagcgaaagccgaaggtcatccgcagtgaaacagggact
ccggagaccaaacgcgggagagctgaaagcgaacaggatgtgcgtgtgtataatgaagaa
gtggagctggagggcagagacccgcagcaggactacacgctctataaggaaacgtgcgcc
gctctagccaaactcatgtcagaaatccaagagctcaagaccagcggcgccaaagatgga
agcgctgagatcgagctgagacgcaaacagagcagcattcacttcattaccctgaagaaa
ctcaatcgcctggcacacatgaggctgaagaaaggcagagaccagacacacgaggcaaag
cagcgggtggatgttctccacctgcagctacagaatctgctgtatgaggtcatgcacctg
cagaaggagatcggcaaatgtctcgagttcaagtctcagcatgaggagattgagctggtc
agtgaggacgagttcttccaggatgctccggccgagatctcacggcctcaggtcacccgt
gaagatcaccaccagctcacgctcgcccgactggactgggaactggagcagaggaagagg
ttggcggagcagtataagacttctctgtccagcaaagagaagattcagaaagccatcgag
cagaagagagaatatctgagcagcttacagcccggactgcacaacatcatgcaggcgtct
cttccagtgcaggagtatttgtcgatgccgtttgagcacatgcagaagcaggcagaagtg
gctcgtcacctgccaccccctctttatgtgttgtttgtccaggccggtgcctacggacag
gcctgcgacaaaaatctgactgtcagcatccgcggagacgtggatgaagctaaagctctt
tccagaccgcctgaagactcacaagatgatgaaagtgattcagatgcggaagaggagcag
cagaacacgaagcgcagacggccaactgtaggagttcagctggatgacaagaggaaggag
atgctgagacgccacccgctctctctcggcatcgacctcaagtgtaaagacggcagcgtc
ctgcatctgtatttctattatctcatgaatctcaacattctgactgtgaagaccaaagtt
tctacatctgttgatctgtctggagccatcagcgcaggggagctgttgaactcggagagt
ttgctgaactgtctttatgcgtcagatcatggtaatgagaccccaaaccctgcaaaccgc
taccagtttgataaagtcggaatcactacattcgctgattatgtgtcagacctcggacat
ccgtatgtttgggtgcagaaactgagcggtctgcagttctcatctgatgctgcacagtcg
gagctgtcgggcagtgctctgagtgccagtcatatggagaagagcatgaaactgctgcga
ggaagattacagtctcgtctcgccctgcacaaacagttcagctcactggagcacagcatc
gtcccggtctccagcgagtgccagcatctgttccccgctaaagtggtttctggtctcaca
cgctggaccatgatgagccaccaggagttcactgagctgagttttgtgcagcatgtgttg
aaggccggtctggtgtccgagacggatctgttcttcaaggctgtagtggagagaggaaca
gcacgtctgctggctgcagtggtggtgaacccgcgctacccagaagtcactccgctgttc
tctctgtctctgctgtggaaaggcgagcgcagcggtcgcaccgatgataacctgagggcc
atggagagtgaagtgaacgtgtttcgcgttgagcttcaggggccacgtccgggtctccag
ctgctgaccaatcagatccagcgtctctgcatgtgtctggatgtgtatctggagaccgag
agtcaagtatccgatgggtcagagggacctaaagagtttcccagagagaagatgtgcttg
cggactgccaggggtccgagtcgcctgaagcccttcaagtacaatcatcctcagggcttc
ttcagtcaccgttga
DBGET
integrated database retrieval system
