Danio rerio (zebrafish): 326944
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Entry
326944 CDS
T01004
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
326944 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
326944 (prpf4)
Spliceosome [BR:
dre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
326944 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_EML
PRP4
ANAPC4_WD40
Beta-prop_Aladin
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
WD40_like
Beta-prop_SPT8
Beta-prop_WDR11_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
326944
NCBI-ProteinID:
NP_956049
ZFIN:
ZDB-GENE-030131-5143
Ensembl:
ENSDARG00000067639
UniProt:
Q6PH45
LinkDB
All DBs
Position
5:62703146..62714635
Genome browser
AA seq
507 aa
AA seq
DB search
MSDEDEAPVVKRSRIFYGSLEEKEKERLSREGTSTTAKDAVKAGIEAGHINISSGESMEM
EERVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPAERRERLRN
VLSVLGPDALKKSKKEDEKAKRTHEEYQQTWYHEGPTSLKEARLWLAKYSLPRAVKRLDA
ARAQKEIPESTRTIKQQELHKNLRNVNNFCSQIGDDRPISYCQFSPNSKLLVTASWSGLC
KLWKVPDCTLIRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAADGSVKLWSLDSDEP
IADIEGHSMRVARVTWHPSGRFLGTTCYDHSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFARVWDLRTGRCVMFLEGHIKEIYSINFSPNGFHVATGSGDNACKVWD
LRQRRCIYTIPAHQNLVSSVKFQPNDGHYLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKV
MGVDLSPDGQLIATCSYDRTFKLWMSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgaagatgaagctccagttgtgaaaaggtccaggatcttctatggaagcctt
gaggaaaaggagaaggagcgtctcagccgtgaagggacatccaccactgccaaagatgcc
gttaaagctggcattgaggctggacatattaatatctccagtggtgagtccatggagatg
gaggagcgtgtgagcgagagacaggctgaagtgctggcagagtttgagcgcaggaagaga
gccagacagatcaccgtctctactgatgatgtagaggtgaaggcctgccttcgtgcactt
ggagaaccaatcacattgttcggggaggggcctgcagagagacgagagagattgagaaac
gttctttcagtacttggtcctgatgccttaaagaaatccaagaaagaggatgaaaaagca
aaacgcactcatgaagagtatcaacagacatggtaccatgaaggacctacatctctgaag
gaagcgcgtttgtggttagccaagtattcactgcctagagctgtgaaacgtttagacgca
gcaagagcccaaaaagaaattccagaatctacacgaacaattaaacagcaagagcttcac
aagaacttgcggaatgtaaataacttctgcagccagatcggagacgaccgtccaatatct
tactgccagtttagccccaactcaaagctgcttgtgacggcatcatggtcgggcttgtgt
aaattgtggaaggtccccgattgtactcttatacgcacattaagaggtcacaataccaat
gtgggagcgattagctttcacccacaagccacactaacacttgaggagtcagatgtcaat
atggcctcttgtgctgcagatggatctgttaagctgtggagtttagacagtgatgaacct
atagcagacattgagggacactctatgagggtggctcgggtgacctggcatccctctggc
cggtttctgggcacaacttgctatgatcactcatggcgactttgggatcttgaggtccaa
gaagaaattcttcatcaggagggtcacagtaaaggcgtccatgatctgcacttccaccca
gatggctctttggcaggaactggtggtttggattcatttgcacgtgtctgggacctgcgc
actggtcgctgtgtcatgttcctagagggccacatcaaagagatttacagcatcaacttt
tccccaaacggctttcatgtggcaacgggaagtggagataatgcctgtaaagtgtgggac
cttcgccagagacggtgcatatacacaatcccagcccatcagaaccttgtgtcctctgtc
aagttccaacctaatgatgggcattatttgctgactggtgcgtatgacaacacggctaaa
atctggactcatcctggctggtccccgctgaagaccctggcaggacatgaggggaaggtg
atgggggttgacctttcacctgacggacagctcatcgcaacctgttcttatgaccgaacc
tttaaactctggatgtcagaatga
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