Danio rerio (zebrafish): 327491
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Entry
327491 CDS
T01004
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03030
DNA replication
dre03420
Nucleotide excision repair
dre03430
Mismatch repair
dre03440
Homologous recombination
dre03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
327491 (rpa1)
03420 Nucleotide excision repair
327491 (rpa1)
03430 Mismatch repair
327491 (rpa1)
03440 Homologous recombination
327491 (rpa1)
03460 Fanconi anemia pathway
327491 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
327491 (rpa1)
03032 DNA replication proteins [BR:
dre03032
]
327491 (rpa1)
03400 DNA repair and recombination proteins [BR:
dre03400
]
327491 (rpa1)
Transcription factors [BR:
dre03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
327491 (rpa1)
DNA replication proteins [BR:
dre03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
327491 (rpa1)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
327491 (rpa1)
MMR (mismatch excision repair)
327491 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
327491 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
327491
NCBI-ProteinID:
NP_956105
ZFIN:
ZDB-GENE-030912-3
Ensembl:
ENSDARG00000003938
UniProt:
Q6NY74
LinkDB
All DBs
Position
15:complement(28975897..29016551)
Genome browser
AA seq
601 aa
AA seq
DB search
MTVRLSEGAIESLSKGTEVNNPILQCVNIRKIDGGNGVSRFRVMMSDGLHTMSSFMLSTQ
LNPMAEQNQLATNCVCVLKRSVTNVLKDGRRVVVILDIEVLKSADQMPGKIGDPTPYVEG
QSKAPSTAPAPTARPLQPQNGSDGSTYRPSAQSFGKKPMAAPNTPGGSSKVVPIASLNPY
QSKWTIRARVTNKSAIRTWSNSRGDGKLFSMELVDESGEIRATGFNNEVDKFFSLIEQGK
VFYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSNDVPMLQCDFVSIADLESREK
DTILDVIGVCKNAEDVARIMTKNSREVSKRNIQLIDMSGRVIQLTMWGSDAETFDGSGQP
ILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPG
GGGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQQN
GMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKDTNE
AAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRKLAA
Q
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgactgttagactgtcggaaggggcaattgagtccctttcaaaaggaactgaagtcaac
aaccctattcttcaatgtgtgaacatccgcaagattgatggaggtaatggtgtgtcccgt
ttccgtgtcatgatgagtgatgggctgcacactatgtcctcgttcatgctgtccacacag
ctcaatcccatggctgagcaaaaccagttggccactaactgtgtttgtgtgctgaaaaga
agcgtcactaatgttctcaaggatggacgacgggtggtggttatactggacatagaagtg
ctcaagtctgctgaccaaatgccgggaaagattggagacccgactccttacgttgagggt
cagtcaaaggcaccgagtacagctccagctccaactgcacgtccattacagccacagaat
ggaagcgatggttcaacgtacaggccttctgctcagagcttcgggaaaaaacccatggct
gctcccaacactcctggaggcagctccaaagttgtgcctatcgccagcctcaatccatac
cagtcaaaatggaccattagagccagagtcactaacaagagtgccatccgcacatggagt
aactccagaggggatggaaaactcttctcaatggagcttgtggatgaaagcggggagatc
agagcaactggattcaataatgaggtggacaaattcttctccctcatcgagcaggggaaa
gtcttctacatctccaaaggcacccttaagattgctaacaaacagttctcctcactcaag
aacgattacgagatgactctcaatggcgagacaagcatcatcccttgtgaggatagtaat
gacgtccccatgttgcagtgcgactttgtgtccattgcagacttggagtctcgggagaaa
gacaccatcttggatgtgatcggagtgtgtaaaaatgcagaggatgtggcacgcatcatg
accaagaacagtcgtgaggtatccaagaggaacatccaactgattgacatgtctggcaga
gtcatccagctgaccatgtggggcagtgatgcagagacgtttgatggcagtggtcaaccc
atcttggccattaagggtgcaagattgtctgacttcggtgggcgttctctctccactctc
tatagcagcacagtcatgatcaaccctgacattcctgaggcgtacaaactgcggggctgg
tatgataaggaaggacatgcattggatggacagtccatgacagagctgagaggaccaggt
ggtggtggaaacacaaactggaagaccctggcggaagtcaaaaatgagcatcttggccat
ggagacaaagctgattatttctcttgcatcgcaaccatagtctacatccgcaaagagaac
tgcttgtatcaggcctgtcccagtaaagactgcaataagaaggtggtggaccagcagaat
ggcatgttccgctgtgagaaatgcgacaaagagttccctgacttcaaatatcgtctcatg
ctctcggccaacattgctgattttggagacaaccagtgggtgacttgctttcaagacact
gccgagactcttctgggccaaaattctagttatcttggccaactaaaggacacaaatgaa
gctgcatttgatgaggtctttcagcatgcaaacttcaatacctttgtcttccggaaccga
gtgaagctggagacctacaatgatgaatcgcgcattaaagtgacagtggtggacgccaag
cctgtggaccaccgagaatacagcaaacggctgatcatcaacataaggaagttggctgca
cagtag
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