KEGG   Danio rerio (zebrafish): 334055
Entry
334055            CDS       T01004                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    334055 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    334055 (taf5l)
   03036 Chromosome and associated proteins [BR:dre03036]
    334055 (taf5l)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     334055 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     334055 (taf5l)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     334055 (taf5l)
    STAGA complex
     334055 (taf5l)
    TFTC complex
     334055 (taf5l)
    SAGA complex
     334055 (taf5l)
    SLIK complex
     334055 (taf5l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd TFIID_NTD2 Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_SCAP ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_SPT8 PROPPIN WD40_RFWD3 PEP5_VPS11_N Beta-prop_WDR19_1st Beta-prop_IP5PC_F Ge1_WD40 WD_LRWD1 Beta-prop_ELP1_1st eIF2A TRIP13_N
Other DBs
NCBI-GeneID: 334055
NCBI-ProteinID: XP_068080221
ZFIN: ZDB-GENE-030131-5987
Ensembl: ENSDARG00000025808
UniProt: A0AB32U277
LinkDB
Position
1:complement(57389232..57401419)
AA seq 601 aa
MKRVRTEQIQYAVTQYLKRRQYIDTDGSMKGAKLSQTAEEMAASLTVQTESSCANVVSAA
PCQADPQQYENQYSRLRSFLQEAEGPLVKEASSVLFPLFLYLHLHMARCGLKGALDSFYS
RFHSLFQQDPEQKAIVDLLRGALTLQDVTTNPKLCALLDHKYVVYLTDQAYSYLLRYLQS
EDNSAICWVLTAHLQVEVTAAQRTDYQLYGAGVGTGNTSSSSSSTWASVDGSEGAERLEV
PAGLPQNEAALENLQDCIKRVREGPPSLTTVCFYAFQHTEQLLNTAEVSADSRLLAAGFD
NSAVKLWSLRARKLKAGPHRADVSKIRLACDVLEEEADDEDASGSEIKTLRGHSGPVYRT
AFLTDASGLLSCSEDSTVRYWDLKSFTNTVLYRGHAYPVWDVDVSPCSLYFSTASHDRTA
RLWSFARTYPLRLYAGHLSDVDCVKFHPNSNYIATGSTDKTVRLWSTQQGASVRLFTGHR
GPVLTLAFSPNGKYLASAGEDQRLKLWDLASGGLFKDLRGHTDTISSLSFSQDSSLVASA
SMDNTVRVWDIRNAHGSAPTDGCSSELIGQYTGSTSNILNVQFMACNLLLVTGTAMEKQE
Q
NT seq 1806 nt   +upstreamnt  +downstreamnt
atgaagcgtgtccggacggagcagatccagtatgcggtgacgcagtacctgaagaggaga
cagtatattgacactgatggatcaatgaaaggagcaaaactctcacaaaccgctgaggag
atggcggccagtctgacagttcagacggagtcgagttgtgccaatgtggtgtccgcggcc
ccgtgtcaggcggaccctcagcagtacgaaaaccagtactccaggctacgctccttcctg
caggaggctgaagggcctctggtaaaggaggcgagcagcgtcttgttcccgctcttcctc
tacctgcacctgcacatggcccgatgtggcctgaagggggcgctggactcgttctacagc
cgctttcactcgctcttccagcaggaccctgaacagaaggccatcgtggacctgctgcga
ggagccctcactctacaggatgtgaccacaaatcctaaactgtgcgccctgctggaccac
aagtatgttgtatacctgacagatcaagcgtacagttacctgctgcgctacctgcagagt
gaagacaacagcgccatctgctgggtgctcaccgcacatctgcaggtggaggtgacggca
gcgcagagaaccgactatcagctgtacggtgcaggggtcggcacaggaaacaccagctct
tcttcttcctccacatgggcatcagtggacggttcagaaggagcggagcggctggaggtg
cccgcaggtttaccgcagaacgaggcggcgctggaaaatctgcaggactgtataaagcgt
gtgcgtgagggcccgccgtcgctcaccaccgtctgcttctacgccttccagcacacggag
cagctgctgaacactgctgaggtgtcggcagacagtcgcctgctggcggccggcttcgat
aactctgcagtgaagctctggagtctgagggcccgcaagctgaaggcaggaccacacaga
gccgacgtgtccaagatcagactggcctgtgacgtgctggaggaggaggcggatgacgag
gacgcctcaggcagtgagataaagactcttcgtggacacagtggtcctgtgtaccgcaca
gccttcctgacggatgcctctggcctgctgtcctgctcggaggactccacagttcgctac
tgggacctcaagagtttcacaaacaccgtcctgtaccgcggtcatgcttaccctgtatgg
gatgtagacgtgagtccctgcagcctgtatttctccacagcatcccacgaccgcaccgct
cgcctgtggagcttcgcgcgcacgtatccgctccgtctgtacgccggccacctctcggac
gtcgactgtgttaagttccacccaaactctaattatattgcgacgggttcgactgataaa
actgtacgcctgtggagcacccagcagggggcgtctgtaaggctgttcactgggcaccgc
ggacccgtcctgacgctcgctttttcaccaaacggaaagtatttagcatctgccggagag
gatcaaaggttgaaactgtgggatctggcatctgggggcttgtttaaggatctgcgtgga
cacaccgacaccatcagcagcctctcctttagccaggacagcagtttagtggcgtctgcg
tctatggacaacactgtgcgtgtgtgggacattcgcaatgctcatggctccgcccccacc
gacggctgcagcagcgagctgattggacagtacaccggcagcactagtaacattctcaat
gtgcagttcatggcctgtaacctgctgctggtgacgggaacagccatggagaagcaggag
cagtga

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