Danio rerio (zebrafish): 334488
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Entry
334488 CDS
T01004
Symbol
xrcc6
Name
(RefSeq) X-ray repair cross-complementing protein 6
KO
K10884
ATP-dependent DNA helicase 2 subunit 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
334488 (xrcc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
334488 (xrcc6)
03400 DNA repair and recombination proteins [BR:
dre03400
]
334488 (xrcc6)
Spliceosome [BR:
dre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
334488 (xrcc6)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
334488 (xrcc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku_N
Ku
Ku_C
SAP
VWA
SAP_new25
Rho_N
DUF4225
Motif
Other DBs
NCBI-GeneID:
334488
NCBI-ProteinID:
NP_956198
ZFIN:
ZDB-GENE-030131-6420
Ensembl:
ENSDARG00000071551
UniProt:
F1QZ60
LinkDB
All DBs
Position
12:18898864..18904360
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AA seq
610 aa
AA seq
DB search
MANWGNYFPNEDDVDEQDEEESGGDYKSSGRDSLVFLVDASKEMFIKGENGEPSNFDMTM
QCVRSVYTSKIISSDRDLVALVFYGTEQSKNPRNSFKHVYVYHDLESPGAKRVQDIDKLK
GDKGGQFAEKTMGSGETSLGEALWCCSNLYSDIKLRLSHKRLMIFTCRDEPHGGDSAKDR
QARTKAADLKETGVAIDLMHLSKPGGFDVSLFFCDIVSPPEDESDLGLQIEPCRKLEDLQ
KRVRAKELKKRAQCRLTFSLGEGVDLAVGVYVLARTAMKPSAVKLYRDNNEPVRTKSRLF
HTQTGGILLPNDTKRAQVYGQKQIVMEKDEVDEIKKFDDPGLVLIGFKPIDRLKLHHHLR
PALFIYPEEEQISGSSCMFTALLLKCCEKNVFALCKYIPRRNTPPRFVALVPQREELDQS
QTQATPPGFHVIYLPFADDIRTVDPHVGPTASDEQVDKMKEIVHKLRFKYRSDAFENPVL
QQHYSNLEALALDMLSPEPIEDLTMPKVKMMDDRLGPLVQEFKDLVYPPDYNPEGKPAAK
RKPAESGGGAAEKKAKVEISEEELKIHVAKGTLGKLTVPVLKDACKQFNIRTTGTKKQEL
IDALTMQLSK
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggcgaactggggaaattactttccaaacgaagacgatgtggatgagcaggatgaagaa
gagtctggaggcgattacaaaagcagcggccgtgacagcttggtgtttttggttgatgca
tccaaagagatgttcatcaaaggggagaatggagagccatcaaattttgacatgactatg
cagtgtgtgcgcagtgtgtacactagtaagatcataagcagtgacagagacctggttgct
ttggtgttttatgggactgagcagagcaagaaccccagaaactccttcaagcatgtttac
gtctaccacgacttggagtcccctggagcaaaacgtgtacaggatattgataaactgaaa
ggtgataaaggtggtcagtttgctgaaaagaccatgggcagtggggaaacttctctcgga
gaggctctgtggtgctgttccaacctttacagtgacatcaagttgcgactgtcacacaag
cgcctcatgatattcacatgcagggatgagcctcatggaggagacagtgcaaaagacaga
caggctcgtacaaaggctgctgacctaaaagagacaggtgtagccattgacttgatgcac
ctctcaaagcctggagggtttgatgtttcactgttcttttgcgatattgtaagtcctcca
gaagatgaaagtgatctcggccttcagattgagccctgcaggaaactggaggacctgcag
aagagagtcagagcaaaagagttaaagaaaagagctcaatgcaggttaacgttctccctt
ggagaaggtgtcgatctggctgttggcgtatacgtgttggccaggactgctatgaagcct
tctgctgtcaaactttacagagataataatgaacctgtacggactaaatcccgtctcttc
cacactcaaactggtggcattttattaccaaatgatacaaagagggcacaggtttatggg
cagaagcagattgtgatggaaaaggatgaggtggatgagataaagaagtttgatgatcca
ggattggtactgattggatttaagcctatagatcgcctcaaactgcaccatcatttacga
cctgctcttttcatataccctgaggaggagcagatatcaggaagctcctgtatgtttaca
gctctgcttttgaagtgctgtgaaaaaaatgtatttgcattgtgcaaatacatccctcgt
cgtaacactccacctcggtttgtggcactagtgccccagagagaagaactggatcagagt
caaacccaggcaacacctccaggcttccatgtgatttatcttccctttgctgatgacata
cgcactgtggaccctcacgttggtcccacagcctcggatgagcaggtagacaaaatgaaa
gagatcgtgcacaagctccgctttaaatacaggagtgatgcatttgaaaacccagtgctg
caacagcactacagtaatctggaggctttggctctggatatgctttcacctgaacccatt
gaggatttgacaatgccaaaggtaaaaatgatggacgatcggcttggtccgctggttcaa
gagttcaaagatttggtctatcctcctgattataacccagaagggaaacctgcagctaaa
cgcaaacctgctgaatctggtggtggtgctgctgaaaagaaggccaaagttgagatttcc
gaagaagagctgaaaattcatgtcgcaaaaggcactttgggaaaactgacagtgcctgta
ctaaaagatgcatgcaaacagtttaatatacgtacaacaggaaccaagaaacaggagctt
atcgatgccctgaccatgcagctctctaaatga
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