Danio rerio (zebrafish): 335236
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Entry
335236 CDS
T01004
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
335236 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
335236 (ndc1)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
335236 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
335236
NCBI-ProteinID:
NP_956237
ZFIN:
ZDB-GENE-030131-7176
Ensembl:
ENSDARG00000021120
UniProt:
Q7SZC5
LinkDB
All DBs
Position
2:complement(26576832..26590623)
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AA seq
671 aa
AA seq
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MFSMKQNCWFIRKVVIWRAVASIAWSVLLLPITTAVFVLLSRFSLFHPIQWISDCTNLLT
ASSTIFSLMVLCAVVLITGFFNLEFYTLVPSIPCSRVALLGTVLHPLQCVHSLVYSSMGM
LVMWCASVIISGRYSTLGTPCMQNESGDVLTCLNEYHLFLLLAGAFMGYSHSFLGVVKNM
YYVSFQPIQQYKYPQFKGCLPMLLKCSVIQSLYSTRNFAALYFFFGYVPRAWISSTLNLP
IDSSLQPLDSLTGLLDFSLLYHLSISGTFLYFTWYLTVLIFRIYATEAYSFPVQSTFSED
AERCLPKVVGEKSTLVMKFLALQDLALLSQHSPSRRQEVFSLSQPGGHPHNWNAISGECL
CLLRDLTQRLVAHQDAVASNGRVKSQSASSDTRSASSSSSVLSGMEDVPETPRPTVPLRT
PGSVFKSSVGGMHSSLTAPFTPDVDSPFCSPAIRRLVGQQDPQSPWFGTVQSPHIMRRGP
KLWSASTESQSNGSPPASPAIAPSPPAANKKPSFLAQWLQNRKEQVKSFLAKRVLIVYLF
NKLPEASSQALFADSQAHIWALQGLSHLVAASFSEDQFGVVQTTLPSILSSLVVLLEAVD
RHFKLPHASSKPARTVCSMGDSTYKTLRFALRAALKTAIYKITTTFGEHLNAVNISTEHR
KRLQQFLEFKE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgttttccatgaaacagaattgctggtttataagaaaggttgtgatctggagagcggtg
gcgagtattgcatggtcagttcttctcctgcccatcacaactgcagtctttgtgctcttg
agtagattcagtctgtttcaccccatacaatggatttcagattgcacaaatctgcttacg
gcctccagcaccatcttttccctgatggtgctgtgtgccgtggttctgatcactggcttt
ttcaacctggagttttacacactggttccctcaattccatgctcgcgtgtggctcttctg
gggacggtgcttcacccacttcaatgtgtccattctttggtttactcctccatgggcatg
ctggtaatgtggtgtgcttctgtcatcatcagcggacgttacagcactcttggaactccc
tgcatgcaaaacgagagcggtgacgtgctgacctgtctgaacgagtatcatctgtttctt
cttctggctggggctttcatgggatacagccatagttttttgggagtggttaaaaacatg
tactatgtttcctttcaacccatacaacaatacaaatacccgcagttcaagggctgtctg
ccaatgctgctgaagtgcagtgttattcagtctttatattcaaccagaaattttgctgct
ctttatttctttttcgggtatgttcccagggcctggatctccagcacacttaatctacca
atagacagttctctccaaccgctggattcactgactggacttctagacttctccctcctc
taccacctgtctatcagtggcacgttcctgtacttcacctggtacctcaccgtgcttatc
ttcaggatttatgccacagaggcctacagttttccagtgcaatccacgttttctgaggat
gcagaacggtgcctgcctaaagttgtaggtgaaaagagcactctagtcatgaagtttttg
gctctgcaagacctggctttattgtcacagcattctccctcacgaagacaggaggttttc
agtctgagtcagccaggtggtcaccctcataactggaacgccatcagtggggaatgtctg
tgtttactgagagatttgacccagagactggtggctcatcaggatgcagtggcctctaat
ggcagagtcaagtctcagtctgccagcagtgacaccagatcagcctcttccagcagctca
gtgttgtcaggaatggaggatgttcctgagactcctcgacccacggttcctctaaggacc
cctggttcagtgtttaagtcttcagttgggggcatgcacagctcactgactgctcctttc
actccggatgttgacagccctttctgctcccctgctattcgacgtctggttggccaacag
gatcctcagtcaccttggtttgggactgtgcaaagtccacacatcatgagaagaggcccc
aaactatggagtgcctctacagaatctcaaagcaatggcagtcctcctgcttctcctgcc
attgctcccagtcctccagcagccaataagaagcccagctttcttgcccagtggctgcag
aacaggaaagagcaggttaaaagctttttggcaaagcgggtgctgatagtgtatttattt
aacaagcttccagaagcctcaagccaagctctgtttgctgacagccaggctcatatctgg
gctcttcaaggactatctcatctggtggcagcctctttctcagaggatcagtttggagtg
gtgcaaacaaccttacccagcattctcagcagcttggtagtcttgcttgaggctgttgac
agacattttaagctgcctcatgcctccagcaaaccagcgaggaccgtctgcagtatgggt
gactccacttacaaaactctaaggtttgctttgagagctgcactgaagacagccatctac
aagattactaccacttttggggaacacttgaatgctgtgaatatttcaactgaacataga
aaacggcttcagcagttcttggaattcaaggaatag
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