Danio rerio (zebrafish): 335396
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Entry
335396 CDS
T01004
Symbol
srsf5a
Name
(RefSeq) serine and arginine rich splicing factor 5a
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
dre05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
335396 (srsf5a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
335396 (srsf5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
335396 (srsf5a)
Spliceosome [BR:
dre03041
]
Common components
Common spliceosomal components
SR proteins
335396 (srsf5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
RRM_occluded
Nup35_RRM_2
SET_assoc
DUF4090
OB_RNB
Motif
Other DBs
NCBI-GeneID:
335396
NCBI-ProteinID:
NP_957161
ZFIN:
ZDB-GENE-030131-7336
Ensembl:
ENSDARG00000029818
UniProt:
Q6TGT9
LinkDB
All DBs
Position
13:complement(36530230..36535067)
Genome browser
AA seq
259 aa
AA seq
DB search
MSGCRVFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGK
ELCSERVTIEHARSRRGRGGGPGMGGRFSPRFGGYRQSRSGGSRYGPPVRTEHRIIVENL
SSRISWQDLKDLMRKVGEVTFVDAHRTKKNEGVVEFASHSDMKNAIEKLDGTDLNGRKLK
LYEDRKRNRSRSRSRSRSSSRSRSPSRSRSPERGSKRSRSRSLSRTPEKKSTSNRSPSRS
PTPQRKQSRSRSASAESQH
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgagtggatgtcgtgtgtttattggccgtctgagccctcatgctcgtgaaagagatgtg
gagaagttcttcaaaggctacggacgtatccgagagattaacctgaagaacgggtttggc
tttgtggagtttgacgactacagggatgcagatgatgcagtgtatgaactgaatggcaaa
gagctgtgcagtgagagggtgaccattgagcatgcccgctctcgcagaggaagaggtggt
ggcccaggaatgggaggtcgtttctctccacgctttggaggttatcgtcagtcccgcagt
ggcggttccaggtatggaccaccagtgcgcacagagcacagaatcatagtggagaatctc
tcctctcgcatcagctggcaggacctgaaggacttgatgaggaaggttggagaagtaact
tttgtggatgcacacaggaccaaaaagaatgaaggggtggtggagtttgcttcacacagt
gatatgaagaatgccatcgagaagcttgatggaactgacctgaacgggcgcaaactcaag
ttgtatgaggaccgcaagaggaaccgcagtaggagtcgttcccgcagcaggagcagctct
cgttctcgttccccaagccgcagtcgcagccccgagcgtggaagcaagcgctctcgcagc
cgctccctcagtcgcaccccagagaagaaatccaccagcaacagatctccttcccgctct
ccaactcctcagaggaaacagagccgctctcgatctgcctccgcagagagtcagcactga
DBGET
integrated database retrieval system
