Danio rerio (zebrafish): 336342
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Entry
336342 CDS
T01004
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
336342 (taf1c)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
336342 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Motif
Other DBs
NCBI-GeneID:
336342
NCBI-ProteinID:
XP_002665919
ZFIN:
ZDB-GENE-030131-8286
Ensembl:
ENSDARG00000096310
UniProt:
A0A8M1RRS6
LinkDB
All DBs
Position
21:complement(5801344..5838539)
Genome browser
AA seq
994 aa
AA seq
DB search
MDGTFPHQLFPHFYLDGPPDVKPKHCYSGWGTYERVFPVNAEQCDDEGALYRHKFESQHT
VRGEEWVQLKPAVTPFTPPHKDAKVYSTDPLDPLDFPEQMKYYYQHHCMDAFSTMGRLLE
ENFTYKSNQSKDVMSLRWSKDFVKGLNYKRCELGKSSRKVRHIHRLLSDIVTDVPQPLLC
SLLHEELTYQSEQQQFSADATGGALGFLPFYESEKGSDGCLIYSSGALMDKICFHRVAQE
YKDDGTPTFNMGSEPVVFNLNAAARQISCGNYENSVHVAVRSDYFCGAWFVFDKLKPSLV
DVIQTKQRFSCVTVSPHLPGEIVVANEQGAAYLWTPKKGLQKFREEDANLYFNAKSPWRW
CDFSCHPRVLVYADRTGAELTDIRSADCNHTLFRIGKTPACLSGERVILVKYLGNIHPHH
HLINTQFSSYIMDERVPSIPMLKWDHMMDFPPIYTCALPPKSQSQSCKVLLGAQRSQEIM
LLQYTGGRQHACQTQGPIQKLLCPKDSLSHLNLQLPHKRRIAQKRLNSPAAGFMALQNKD
YLSVFHLTDTADIFYQTLKLQTDQTTTDAQDPEQAVRVEPTVGDNENLQLQTNDNISEND
SETEGQQVPLSPLKVIDNVDNDPLNNLDANENVSNEPPNNSTGINPSGSTKPLKQSKYLD
LQRIWDVWFDYLFKNSADKKWLPQFRRIYTADIKCLRTNKQDKLEEDRLTRLRKDLQEVM
RNRDLLVHGVTYLPHLNVEQIPDPVDPEDWPDDVSQRMAASWEGNWKSWWEDKLGLNRDK
KIANLRQKRRREKQARSRSRTSLSGSFASSVSNPDSLSGWSSATSQYLGSDEETLENSQA
TDIEEWKSRPENRNKSPILLRRFLNEQSVEKEAVISPLRRLEQELMRSSKSQPSLQVKQP
TSGTPKATVEKDSVDHPGLVSPLRKLSIPLKRCKEFYLSSLPTSQASTQDSTADGGFSVP
QARLLSPAAPSQRASQIRSSSQASQPKKKSRMGF
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggacggcacttttccacatcagctttttccacatttttatctggacggaccgcctgat
gtaaagccgaaacactgctatagtggctggggaacatatgagcgagtgtttcctgtcaat
gctgagcagtgtgatgatgagggggcgttgtatcggcacaagtttgaatcccagcacaca
gtgaggggtgaggaatgggtgcagctcaaaccagccgtcactccttttacaccaccacat
aaagatgccaaagtctactccactgatccgctggatcctctggattttccagagcagatg
aagtattattatcagcatcactgtatggatgctttctccacaatgggacgtttgctggag
gaaaacttcacttataaatctaatcaatccaaggatgttatgtcattacgctggtcaaaa
gactttgtaaagggcttgaattataagaggtgtgagcttgggaaatcttccaggaaggtc
cgtcatatccaccgtctcctcagtgatatcgtgacggatgttcctcagcctctgctttgc
tcgctccttcatgaagagctgacctatcagagcgaacagcagcagttctctgcagatgct
acaggtggcgctttgggttttttacccttctatgagtctgagaaggggagcgatggttgt
ctgatttattccagtggagccttaatggacaaaatctgcttccacagggtggcgcaggag
tataaggatgatgggactccgacttttaatatgggctctgaaccagttgtctttaatctg
aatgcagcggccagacaaatcagttgtggaaactatgagaattcagttcatgtggctgtg
cggtcggattatttctgtggcgcttggtttgtctttgacaaactaaagcccagtttggtg
gacgtcatccagacaaaacagcgcttctcctgcgtcaccgtcagtccacacttaccaggt
gagattgtagttgccaatgagcaaggagcagcgtatttgtggactcccaaaaaaggattg
cagaagtttcgtgaagaagatgccaacctgtactttaatgccaagtcgccgtggcgatgg
tgtgatttctcctgccacccgagagtgttggtctatgctgacagaacaggggcggagctt
acagacatacggagtgctgactgtaatcacaccttgttccgcattggaaagactccagct
tgtctgtcgggagagcgagtgattctggtcaaatacctgggcaacatccacccccatcac
caccttatcaacacacagttttcctcctacatcatggacgagcgggttcccagtattcct
atgctgaaatgggaccacatgatggactttccaccaatatacacctgcgctttacctcca
aaatcccagagtcaaagctgcaaagtgctgctgggagctcagaggtcgcaggaaatcatg
ttactgcagtacacgggtggcaggcaacatgcttgtcagactcaaggacccattcaaaag
cttttgtgtccaaaagacagtctaagccacctgaaccttcagctgccgcacaagagacgc
atcgctcagaagagactgaacagccctgctgcaggtttcatggctctacagaacaaggac
tacctgtctgtttttcatcttacggacactgcagacatcttttaccaaacattgaaattg
caaacagatcaaaccacgaccgatgctcaggatccagaacaagccgtcagagtggaacca
acagtaggagacaatgaaaacttgcagttacaaaccaatgacaacatttctgagaacgac
tctgagaccgagggacagcaagtgcctctcagtcctttgaaagttatcgacaatgttgat
aacgatcccttaaacaatttagatgcaaatgaaaacgtcagcaacgaaccacctaacaat
tcaactgggattaatccaagtggctccaccaaacctcttaaacaaagcaaatatcttgat
cttcaacgtatttgggacgtatggttcgactatctttttaaaaactccgccgacaagaag
tggcttcctcaatttcgaaggatctacactgcagatataaagtgcttaagaactaataag
caagataagcttgaggaagatcggttgacgagattgaggaaagacctgcaagaggtcatg
aggaatagagacttgcttgtgcatggcgtcacgtatctgcctcacttaaatgtggagcaa
attcccgatcctgtagatcctgaagattggcctgacgatgtgagccagcgaatggcggca
tcttgggaaggcaattggaaaagctggtgggaagacaagctgggcttaaaccgggacaaa
aaaatagcaaatctccgtcaaaagcgtcggagggaaaagcaagccagaagtcgctctcgc
acatcgctttctggaagcttcgcctcgtctgttagcaacccggacagtctctctggttgg
tcatcggccacgagtcagtatttgggctcggatgaggaaactttggaaaattctcaagcc
acggacatcgaggagtggaagtccagacctgagaaccgcaacaagagccccatcttattg
aggcgctttctaaatgaacagtcggttgagaaagaagcggttatttctcctttgagaaga
cttgagcaagaactaatgagatcttcaaaatctcagccctcccttcaggttaaacaacca
acctccggcacccctaaagctacagtagagaaggattcggtagatcatcccggactggtc
agcccattgcggaagttatccatcccattaaaacgctgcaaggagttttaccttagttct
cttcccacttcccaagcatctactcaagactctacagcggatggtggattttctgtccct
caggctcgccttttgtcaccggctgcaccttcccagcgagcttcccaaatcagaagctcc
tcacaggcctcccagccaaagaaaaagtctaggatgggcttctaa
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