Danio rerio (zebrafish): 336471
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Entry
336471 CDS
T01004
Symbol
col1a2
Name
(RefSeq) collagen alpha-2(I) chain precursor
KO
K06236
collagen type I alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
336471 (col1a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
336471 (col1a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
336471 (col1a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dre00536
]
336471 (col1a2)
Glycosaminoglycan binding proteins [BR:
dre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
336471 (col1a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
336471
NCBI-ProteinID:
NP_892013
ZFIN:
ZDB-GENE-030131-8415
Ensembl:
ENSDARG00000020007
UniProt:
Q6IQX2
LinkDB
All DBs
Position
19:40983221..41002336
Genome browser
AA seq
1352 aa
AA seq
DB search
MLSFVDTRILLLLAVTSYLASCQSGLKGPKGPRGERGPKGPDGKPGRPGLPGPAGPPGPP
GLGGNFAAQYDGAKGPDPGPGPMGLMGPRGPSGSPGAPGAQGLQGHAGEPGEPGQAGAIG
ARGPPGPPGKNGEDGNNGRPGKPGDRGVLGAQGARGFPGTPGLPGMKGHRGYNGIDGRKG
EPGAAGAKGENGAAGSNGTPGQRGGRGLPGERGRVGPAGPAGARGADGNTGPAGPAGPLG
SAGPPGFPGAPGPKGELGPAGPTGPSGAQGQRGEPGPNGAVGPVGPPGNPGANGINGAKG
AAGLPGIAGAPGFPGPRGGPGPQGPSGASGPRGLGGDPGPVGVKGDSGVKGEPGSAGPQG
PPGPSGEEGKRGSTGEQGPTGPLGLRGPRGAAGTRGLPGLAGRSGPMGMPGPRGGVGAPG
ARGPPGDAGRAGEAGLVGARGLPGSPGSSGPPGKEGPSGAAGQDGRTGPPGPTGPRGQPG
NIGFPGPKGPSGEAGKPGEKGPVGPTGLRGSPGPDGNNGPAGPVGLAGAPGEKGEQGPSG
APGFQGLPGPAGPVGEAGKPGDRGIPGDQGVSGPAGVKGERGNPGPAGAAGAQGPIGARG
PSGTPGPDGNKGEPGAVGPAGAPGPQGAAGMPGERGAAGTPGAKGEKGEAGYRGLEGNAG
KDGARGAPGPSGPPGPAGANGDKGETGSFGPPGPAGPRGAPGERGESGPAGPSGFAGPPG
ADGQTGPRGEKGPAGGKGDAGPAGPAGPAGNTGPLGPSGPVGPPGARGDSGPTGLTGFPG
APGRVGPPGPAGIVGPAGLTGPAGKDGPRGPRGDVGPAGPPGENGMIGPLGLAGEKGPPG
EAGAPGAPGPAGPQGQLGSQGFNGLPGSRGDRGLPGIPGSVGEPGRVGPAGAPGARGPGG
NIGMPGMTGPQGEAGREGSPGNDGPPGRPGAAGIKGDRGEPGSPGTAGPVGAPGPNGPSG
AVGRPGNRGESGPSGPTGAVGPAGARGAPGPAGPRGEKGVAGEKGDRGMKGLRGHPGLQG
MPGPNGPSGDSGPAGIAGPSGPRGPAGPNGPAGKDGSNGMPGAIGPPGHRGPAGHVGPAG
PPGSPGLPGPPGPSGGGYDTSGGYDEYRADQASLRAKDYEVDATIKSLNTQIENLLSPEG
SKKNPARTCRDIRLSHPEWSSGFYWIDPNQGCTMDAIKAFCDFSTGQTCIHPHPESIPRK
NWYRSSQEKKHTWFGETINSGTEFAYNDETLSPQSMATQLAFMRLLANQAVQNITYHCKN
SIAYMDAENGNLKKAVLLQGSNDVELRAEGNSRFTFSVLEDGCSRHTGQWSKTVIEYRTN
KPSRLPILDIAPLDIGGADQEFGLDIGPVCFK
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggatacccggattctgttgctgcttgcagtgacttcgtacctagca
tcatgtcaatcgggcctcaagggaccaaaaggacccagaggtgagaggggtcctaaggga
cctgatggaaaacccggccgacctggacttcctggccctgctggccctcctggcccccct
ggtcttggtggaaacttcgctgctcagtatgatggcgctaaaggacctgaccccggccct
ggacctatgggtttgatgggacccagaggaccttctggatctcctggtgctcctggagct
caaggactgcaaggacatgctggtgagcctggagagcccggacaggctggagctattggt
gctcgtggccctcctggaccccctggcaaaaatggtgaagatggcaacaatggcagacct
ggaaagcctggagacagaggagtccttggagctcagggtgcccgtggtttcccaggaact
cctggacttcctggcatgaagggacacagaggttacaatggtattgatggacgcaaagga
gagcctggcgcagctggtgccaagggtgaaaatggtgccgctggatcaaatggaaccccc
ggacagagaggtggtcgtggtcttcctggtgagagaggtcgtgttggccctgctggccca
gctggtgctcgcggtgctgatggtaacactggtcctgctggccctgctggacctttgggc
tcagctggtcctcctggtttccctggtgcacctggacccaagggagaacttggacccgct
ggtcccactggaccatctggagctcagggacaaagaggagagccaggcccgaacggtgcc
gttggccccgttggaccccctggtaaccctggtgctaatggtatcaatggtgctaaagga
gcagctggtcttcctggaattgctggtgcccctggtttccctggccctagaggaggccct
ggcccacagggacctagtggagcttctggtccaagaggtcttggtggtgaccccggacct
gttggagtgaagggagattctggtgtgaagggagagcctggtagtgctggtcctcagggg
cctcctggtccttctggtgaggagggcaagagagggtcaactggagagcagggacctact
ggacctttgggactgcgtggacctagaggagccgctggtactcgtggtctgcctggtctg
gctggcaggtcaggcccaatgggcatgcctggtcctcgtggtggtgttggtgcacctgga
gcccgtggacctcctggagatgctggtcgtgctggtgaggctggtcttgttggagccaga
ggtctccctggtagccctggcagttctggaccccctggaaaggaaggaccttctggtgcc
gctggtcaagatggtcgcaccggaccccctggcccaactggacccagaggccagcctggt
aacattggattccctggtcccaaaggaccttctggcgaggctggcaagcctggtgagaag
ggacctgttggccctactggactgagaggcagccctggtcctgatggtaacaatggtcct
gctggtcctgttggacttgctggtgcccctggtgagaaaggagagcagggaccctctggt
gctcctggtttccagggtcttcctggccccgctggacctgttggtgaggctggcaagcct
ggtgatagaggtatccctggagatcaaggtgtatcaggacctgctggtgtgaagggagag
cgtggtaaccctggacctgctggtgctgctggcgctcagggacccattggtgctcgtgga
ccttctggtactcctggccctgatggaaacaagggagagcctggtgcagttggacctgct
ggtgcccctggaccacagggagctgctggtatgcctggtgagcgtggtgctgctggcacc
cctggagctaagggagagaagggtgaggctggatacagaggactggagggcaatgctgga
aaagatggtgcccgtggtgctcctggacccagtggaccccctggacctgctggtgctaat
ggtgacaagggtgagactggctcctttggtcctcctggacctgctggtcctcgtggtgcc
cctggtgagcgtggtgagtctggccctgctggaccttccggttttgctggaccccctggt
gctgatggccagactggaccaagaggtgagaaaggacctgctggtggaaagggtgacgct
ggacccgctggccctgccggtcccgctggaaatactggaccccttggtccttctggtcct
gttggcccacctggtgcccgtggtgacagtggtcccactggtctgactggcttccctggt
gctcctggtagagttggacctcctggtcctgctggtattgttggacctgctggtctcact
ggtcccgctggaaaggatggcccacgtggtcctcgtggtgatgttggccctgctggtccc
ccaggagagaatggaatgattggacctcttggtctggctggtgagaagggaccccctgga
gaggctggtgcacctggagcacctggacctgctgggcctcagggtcagctgggatcacag
ggattcaatggtcttcctggctccagaggtgaccgtggtcttcctggtatccccggatca
gttggtgaacctggaagagttggccctgctggtgcccctggtgcccgtggacccggtggc
aacattggcatgcctggtatgactggtcctcagggtgaggctggacgtgagggaagccct
ggcaatgatggacctcctggccgtcctggtgctgctggaattaagggtgaccgtggtgag
cctggttcccctggaactgctggacctgttggtgctcctggacccaatggaccatcaggc
gctgttggcagacctggaaaccgtggtgaatctggtccttctggtcctactggcgctgtt
ggacctgctggagcaagaggtgcacctggccctgctggacctcgtggtgagaagggtgtt
gctggagaaaaaggagacaggggtatgaagggacttcgtggacatcctggtctgcaggga
atgcccggacctaacggtccttctggtgacagtgggcctgctggcattgctggaccttcc
ggtccaagaggcccagctggtcccaatggccccgctggtaaagatggttcaaatggcatg
cctggtgcaattggacccccaggacaccgtggtcccgctggacatgttggacctgctggt
cctcctggatctcctggtcttcccggaccccctggcccatctggaggtggatatgacaca
tctggaggctatgatgagtacagagctgaccaggcctctcttagagccaaggattacgag
gtggatgccaccatcaagtccttgaacactcagattgagaatctgctttcccctgagggc
tcaaagaagaaccccgctcgtacttgccgtgacatcaggctcagccacccagaatggagc
agcggtttctactggatcgaccccaaccagggctgcacaatggatgccatcaaggccttc
tgcgacttctctactggccagacctgcatccacccccacccagagagcatcccacgcaag
aactggtacagaagctcccaggagaagaaacacacctggtttggcgagactatcaacagt
ggtactgagtttgcttacaatgacgagaccctgagcccacaatccatggctactcagctg
gccttcatgcgtctactggccaaccaggcagtccagaacatcacctaccactgcaagaac
agcatcgcctacatggatgctgagaatggaaacctgaagaaggctgtgttgctgcagggt
tccaatgatgttgagctcagggcggagggcaacagccgcttcactttcagcgtcctagag
gatggctgcagtagacacactggccagtggagcaagacagtcattgaatacagaacaaat
aaaccatctcgccttcccatcctcgacattgcacctttggacattggtggcgcagatcaa
gagtttggtttggacattggcccagtctgtttcaaataa
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