KEGG   Danio rerio (zebrafish): 336542
Entry
336542            CDS       T01004                                 
Symbol
si:ch211-202a12.4
Name
(RefSeq) polyubiquitin-C
  KO
K08770  ubiquitin B/C
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03320  PPAR signaling pathway
dre04120  Ubiquitin mediated proteolysis
dre04137  Mitophagy - animal
dre04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    336542 (si:ch211-202a12.4)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    336542 (si:ch211-202a12.4)
   04137 Mitophagy - animal
    336542 (si:ch211-202a12.4)
 09150 Organismal Systems
  09152 Endocrine system
   03320 PPAR signaling pathway
    336542 (si:ch211-202a12.4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dre04121]
    336542 (si:ch211-202a12.4)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    336542 (si:ch211-202a12.4)
Ubiquitin system [BR:dre04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   336542 (si:ch211-202a12.4)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   336542 (si:ch211-202a12.4)
  Exosomal proteins of other body fluids (saliva and urine)
   336542 (si:ch211-202a12.4)
  Exosomal proteins of colorectal cancer cells
   336542 (si:ch211-202a12.4)
  Exosomal proteins of bladder cancer cells
   336542 (si:ch211-202a12.4)
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ubiquitin_2 DUF2604 Rad60-SLD_2 TBK1_ULD
Other DBs
NCBI-GeneID: 336542
NCBI-ProteinID: XP_073807362
ZFIN: ZDB-GENE-030131-8486
Ensembl: ENSDARG00000002369
UniProt: A0AC58JLK5
LinkDB
Position
5:42863600..42868556
AA seq 687 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE
NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL
TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH
LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED
GRTLSDYNIQKESTLHLVLRLRGGTKI
NT seq 2064 nt   +upstreamnt  +downstreamnt
atgcagatctttgtcaagacccttactggtaagaccatcacccttgaggtcgagccaagt
gacaccattgagaatgtcaaggctaaaatccaggacaaagaaggcattccccctgaccag
cagaggttgatctttgctggaaaacagctagaagatggccgcaccctgtctgactacaac
atccagaaagagtccaccttgcatctggtgctgcgtctcaggggaggcatgcagatcttc
gtaaagaccttgacaggaaagaccatcaccctcgaggtcgagccaagtgacaccattgag
aatgtcaaggctaaaatccaggacaaagaaggcattccccctgaccagcagaggttgatc
tttgctggaaaacagctagaagatggccgcaccctgtccgactacaacatccagaaagag
tccacattgcatctggtgttgcgtctcaggggaggcatgcagatcttcgtaaagaccttg
acaggaaagaccattaccctcgaggtagagccaagcgacaccattgagaacgtcaaggcc
aaaatccaggacaaagaaggcattccccctgaccagcagaggttgatctttgccggcaag
cagctagaagatggccgcaccctgtccgactacaacatccagaaagagtccacattgcat
ctggtgctgcgtctcaggggaggcatgcagatcttcgtcaagacccttactggtaagacc
atcaccctcgaggtcgagccaagtgacaccattgagaatgtcaaggctaaaatccaggac
aaagaaggcattccccctgaccagcagaggttgatctttgccggcaaacagctagaagat
ggccgcaccctgtccgactacaacatccagaaagagtccacattgcatctggtgctgcgt
ctcaggggaggcatgcagatcttcgtaaagaccttgacaggaaagaccatcaccctcgag
gtcgagccaagtgacaccattgagaatgtcaaggctaaaatccaggacaaagaaggcatt
ccccctgaccagcagaggttgatctttgccggcaaacagctagaagatggccgcaccctg
tccgactacaacatccagaaagagtccaccttgcatctggtgttgcgtctcaggggaggc
atgcagatcttcgtaaagaccttgacaggaaagaccatcaccctcgaggtagagccaagc
gacaccattgagaacgtcaaggccaaaatccaggacaaagaaggcattccccctgaccag
cagaggttgatctttgccggcaaacagctagaagatggccgcaccctgtccgactacaac
atccagaaagagtccaccttgcatctggtgttgcgtctcaggggaggcatgcagatcttc
gtcaagaccttgacaggaaagaccatcaccctcgaggtcgagccaagtgacaccattgag
aatgtcaaggccaaaatccaggacaaagaaggcattccccctgaccagcagaggttgatc
tttgccggcaaacagctagaagatggccgcaccctgtccgactacaacatccaaaaagag
tccaccttgcatctggtgttgcgtctcaggggaggcatgcagatcttcgtcaagaccttg
acaggaaagaccatcaccctcgaggtcgagccaagtgacaccattgagaatgtcaaggcc
aaaatccaggacaaagaaggcattccccctgaccagcagaggttgatctttgccggcaaa
cagctagaagatggccgcaccctgtccgactacaacatccaaaaagagtccaccttgcat
ctggtgttgcgtctcaggggaggcatgcagatcttcgtcaagaccttgacaggaaagacc
atcaccctcgaggtcgagccaagtgacaccattgagaatgtcaaggccaaaatccaggac
aaagaaggcattccccctgaccagcagaggttgatctttgctggcaaacagctggaagat
ggccgcaccctgtctgactacaacatccagaaagagtccacattgcatctggtgttgcgt
ctcagaggtggtacaaaaatttga

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