Danio rerio (zebrafish): 337158
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Entry
337158 CDS
T01004
Symbol
col1a1a
Name
(RefSeq) collagen, type I, alpha 1a precursor
KO
K06236
collagen type I alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
337158 (col1a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
337158 (col1a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
337158 (col1a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
dre00536
]
337158 (col1a1a)
Glycosaminoglycan binding proteins [BR:
dre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
337158 (col1a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
337158
NCBI-ProteinID:
NP_954684
ZFIN:
ZDB-GENE-030131-9102
Ensembl:
ENSDARG00000012405
UniProt:
Q6U1J5
LinkDB
All DBs
Position
3:23221174..23237693
Genome browser
AA seq
1447 aa
AA seq
DB search
MFSFVDILLALLLNATVLLARGQGEDDRTGGSCTLDGQVYNDRDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCPNPVIAHDECCPVCPDDDFQEPSVEGPRGSPGDKGERGPANPPGND
GIHEQSVLPVPTSHSGPAALGGNLSPQMSGGFDEKSSPMAVPGPMGPMGPRGAPGPPGPS
GPQGFTGPPGEPGEAGAPGPMGPRGAAGPPGKNGEDGESGKPGRPGERGPPGPQGARGFP
GTPGLPGIKGHRGFSGLDGAKGDAGPAGPKGEPGAPGENGTPGAMGPRGLPGERGRAGPP
GAAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGSKGEVGPQGSRGAEGPQGARGEAGNP
GPAGPAGPAGNNGADGAPGAKGAPGAPGIAGAPGFPGPRGPPGAAGAAGAPGPKGNTGEA
GAPGAKGEAGAKGEAGAQGVQGPPGPPGEEGKRGPRGEPGAGGARGPTGERGAPGARGFP
GADGAAGPRGAPGERGGPGVVGPKGATGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGPG
GAPGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEAGKPGERGVMGAIGATGAPGKDGDV
GAPGAPGPAGPAGERGEQGAAGPPGFQGLPGPQGATGEPGKSGEQGAPGEAGAPGPSGSR
GDRGFPGERGAPGPAGPVGARGSPGSAGNDGAKGESGAAGAPGAQGPPGLQGMPGERGAA
GLPGLKGDRGDQGAKGADGAAGKDGIRGMTGPIGPPGPAGAPGDKGESGAQGLVGPTGAR
GPPGERGETGAPGPAGFAGPPGADGLPGAKGEPGDNGAKGDAGAPGPAGATGAPGPQGPV
GATGPKGARGAAGPPGATGFPGAAGRVGPPGPSGNSGPPGPPGPAGKEGQKGNRGETGPA
GRTGEVGAAGPPGAPGEKGNPGAEGATGPAGIPGPQGIGGQRGIVGLPGQRGERGFPGLP
GPSGEIGKQGPSGPSGERGPPGPMGPPGLAGPPGEPGREGTPGNEGSAGRDGAAGPKGDR
GETGPSGTPGAPGPPGAAGPIGPAGKTGDRGETGPAGVPGPAGPSGPRGPSGPAGARGDK
GETGEAGERGMKGHRGFTGMPGPPGPPGPSGESGPAGASGPAGPRGPAGSAGSAGKDGMS
GLPGPIGPPGPRGRNGEIGPAGPPGPPGPPGAPGPSGGGFDIGFIAQPQEKAPDPFRHFR
ADDANVMRDRDLEVDTTLKSLSQQIESIISPDGTKKNPARTCRDLKMCHPDWKSGEYWID
PDQGCNQDAIKVYCNMETGETCVNPTESAIPKKNWYTSKNIKEKKHVWFGEAMTDGFQFE
YGSEGSKPEDVNIQLTFLRLMSTEASQNITYHCKNSIAYMDQASGNLKKALLLQGSNEIE
IRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPNQEFGIE
VGPVCFL
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattctgctggcgctgttgctcaacgcaacggtgcttttggca
agaggacaaggcgaggacgatcgcacaggcggcagctgcacattggacggccaggtctac
aatgacagggacgtctggaaaccagagccatgccaaatctgcgtgtgcgacagcggcacc
gtaatgtgcgacgaagtgatctgcgaagacacaagcgactgccccaacccagtgattgcc
cacgacgagtgctgccccgtctgcccagacgacgatttccaggagcccagtgttgaggga
cctagaggttctcccggtgacaagggtgagaggggtcctgctaaccctcccggcaatgat
ggaatccatgaacagtctgtcctccctgtgcctactagccactctggacctgctgccctg
ggaggaaacttgtctcctcagatgtctggtggmtttgatgagaaatcctctccaatggct
gtcccaggccccatgggacctatgggcccccgtggagcccctggacctcctggaccttcc
ggaccccaaggatttactggtccccctggcgagcctggtgaggctggtgctcctggtcca
atgggtccccgtggcgctgctggtccccctggaaagaatggagaggatggtgagtctggc
aaacctggtcgccctggtgagcgcggaccccctggaccacagggtgctcgtggattcccc
ggaacccctggacttccaggcatcaagggacacagaggattcagcggtctagatggagct
aagggkgatgctggccctgctggacctaagggtgagcctggtgcacctggtgagaatgga
actcctggtgccatgggtccycgtggtctgcctggcgagagaggccgtgctggtcctcct
ggtgctgctggtgctcgtggtaatgatggtgccgctggagctgctggtcctcctggccca
actggccctgctggtcccccaggattccctggyggccctggatctaagggagaggttggt
cctcagggatcccgtggtgcagagggacctcagggagcccgtggtgaagctggtaaycct
ggacctgctggtcctgctggtcccgctggtaacaacggagctgatggtgcccctggtgcc
aagggtgctcctggcgctcctggtattgctggtgctcctggtttccctggaccccgtggt
cctcctggagctgctggagcggctggtgcccctggccctaagggtaacaccggtgaggct
ggtgccccaggtgccaaaggagaggctggtgctaagggagaggctggtgcccaaggagtt
carggtccccctggtccccctggtgaggaaggcaagagaggaccccgtggygagcccggy
gctggtggtgcccgcggacctactggtgaacgtggtgctcctggtgctcgtggtttccct
ggtgctgatggagctgcaggtccaagaggtgcccctggtgagcgtggaggccctggagtt
gttggacctaagggtgccactggtgagcctggccgcaatggtgaacctggtatgccagga
tccaagggtatgactggtagccctggcagccctggacctgatggaaagaccggacctggt
ggtgctcctggacaagatggccgccctggaccacctggccctgttggagccagaggacag
cctggtgtcatgggattccctggacctaagggtgctgctggtgargctggcaaacctggt
gagagaggagtgatgggtgctattggtgccactggcgctcctggtaaggatggtgatgtt
ggtgcccctggtgctcctggacctgctggacctgctggtgagagaggtgaacaaggagct
gctggtcctcctggattccagggtctgccaggacctcagggtgctactggtgagccagga
aagtctggtgagcagggtgctcctggagaagctggagctcctggaccttctggttctaga
ggtgacagaggattccctggtgagcgtggtgcccctggccctgctggccctgttggtgcc
cgtggttctcctggttcagctggtaacgatggtgccaagggtgaaagtggtgccgcaggt
gctcctggtgcccagggtcctcctggacttcaaggaatgcctggagagcgtggggctgct
ggcctccctggtcttaagggtgacagaggtgaccaaggtgccaagggtgctgatggtgct
gctggtaaagatggcattcgtggtatgaccggaccaattggaccccccggacctgctgga
gctcctggtgacaagggagaatctggtgctcaaggacttgttggacctactggtgcccgt
ggaccacctggtgagcgtggagagactggtgctcctggacctgccggatttgctggacct
cctggtgctgatggtctgcctggtgccaagggagaacctggagataatggtgctaagggt
gatgctggtgctccaggacctgcaggagcaactggtgcccctggacctcagggtcccgtt
ggtgctactggacccaagggtgcccgtggtgctgctggtcctcctggtgctactggcttc
cctggtgctgctggcagagttggacctcctggcccttctggaaattctggacccccagga
cctcctggacccgctggtaaggagggccagaaaggtaaccgtggtgagactggacctgct
ggtcgtactggtgaagttggtgctgctggaccacctggtgcccctggtgagaaaggaaat
cccggagctgagggtgccactggccctgctggtatccctggacctcaaggtattggtggt
cagcgtggtattgtaggtctccctggacaaagaggcgagcgtggtttccccggtctccct
ggcccatctggagagattggcaaacagggaccttctggtccatctggtgaacgtggacct
cctggccccatgggaccccctggactggctggacctcctggtgagcctggtcgtgagggt
actccaggaaatgagggctctgctggacgtgacggtgctgctggccccaagggtgaccgt
ggtgagactggcccatctggcactcctggagcccctggacctcctggtgctgctggacct
attggccctgctggaaagactggtgatcgtggagagaccggccctgctggtgtccccggc
cctgctggcccctctggtccccgcggaccctctggacccgctggagctcgtggagacaag
ggtgagactggtgaggctggtgagagaggcatgaagggacacagaggattcactggaatg
ccaggaccccctggtcctcctggaccctctggagagtctggacccgctggtgcttctgga
cccgctggacctagaggcccagctggatctgctggatcagctggtaaggatggtatgagt
ggcctccctggacccattggacctcctggaccccgtggtcgcaatggagaaattggacca
gctggacctcctggacctcccggcccccctggagcacctggaccctctggtggtggattc
gacattggcttcattgcccagccacaggagaaggcccctgatcccttccgtcacttccgt
gccgacgatgccaatgtgatgcgcgaccgtgatcttgaggttgacaccacccttaagtcc
ctgagccagcagattgagagcatcatcagcccagacggcaccaagaagaaccctgcccgc
acttgccgtgacctgaagatgtgccacccagactggaagagcggcgagtactggattgac
cctgaccagggctgcaaccaggatgccatcaaggtctactgcaacatggaaactggcgag
acttgcgtcaacccaactgagtctgctattcccaagaagaactggtacacaagcaagaac
attaaggagaagaaacacgtctggttcggagaggccatgaccgatggcttccagttcgag
tatggcagcgagggctccaagcctgaggatgtcaacattcagctcaccttcctgcgcctc
atgtccactgaggcctcccagaacattacataccactgcaagaacagcattgcatacatg
gaccaggcttctggcaacctgaagaaggctcttctcctgcagggctccaacgaaattgag
atcagagcagagggcaacagccgcttcacatacagtgtcactgaggatggttgtacgtcg
cacaccggtgcatggggcaagacagtcattgactacaaaacaacgaaaacatcccgtctg
cctattattgacatagcccctatggacgttggtgcacctaatcaggaatttggcattgaa
gttggcccagtctgcttcttgtaa
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integrated database retrieval system
