Danio rerio (zebrafish): 353295
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Entry
353295 CDS
T01004
Symbol
smarca4a
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
353295 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
353295 (smarca4a)
03036 Chromosome and associated proteins [BR:
dre03036
]
353295 (smarca4a)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
353295 (smarca4a)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
353295 (smarca4a)
Chromatin remodeling factors
BAF complex
353295 (smarca4a)
PBAF complex
353295 (smarca4a)
GBAF(ncBAF) complex
353295 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
353295
NCBI-ProteinID:
XP_021325403
ZFIN:
ZDB-GENE-030605-1
Ensembl:
ENSDARG00000077226
UniProt:
Q7ZSY3
LinkDB
All DBs
Position
3:18030355..18066437
Genome browser
AA seq
1627 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHGMMGPSPGPPSSGHPLPPQG
PSGYPQDNMHQMHKPMEGMHEKGIPEDQRYGQMKGMGMRQGGHSGMGPPPSPMDQHSQGY
PSPLGGSDHAPSPVPANGPPSGPMMPSGPGAMPMEGGDPQAMAQQNRSGGAGGVAGPGPS
GGPPNAGGPGGAGGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQ
QGMPNMPPASGQGAGPPGPGVPGPGGPNYNRPHGMVGPNMPPPGPSGVPPGLQGQPTNGP
PKPWPEGPMVNAAAPASAPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPP
MVLHQKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKANI
ELKALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKI
EQERKRRQKHQEYLNSILQHAKDFKEYHRSITAKMQKLTKAVATYHANTEREQKKENERI
EKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAAQALKDKKK
KKKKKKPENAEGGAPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGMDAPKAGQLDTW
LEMNPGYEVAPRSDSEDSGSDEEEDDEEEPQPSQAPTEEKKVIPDPDSEDVSEVDARHII
EHAKQDVDDEYGNSAFIRGLQSYYAVAHAVTEKVEKQSSLLVNGQLKQYQIKGLEWLVSL
YNNNLNGILADEMGLGKTIQTIALITYLMEFKRLNGPFLIIVPLSTLSNWVYEFDKWAPS
VVKVSYKGSPAARRAFLPILRSGKFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKN
HHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFA
MTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLY
RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGG
IVQGSDLYRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDG
TTKAEDRGMLLKNFNDPSHQYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQD
RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQ
AILEHEEQDEEEDEVPDDETVNQMIARSEEEFDHFMRMDLDRRREEARNPKRRPRLMEED
ELPTWIMKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLDEIE
EEVRHKKTTRKRKRDRDLDLPGPATPSSSGRSRDKDDDGKKQKKRGRPPAEKLSPNPPSL
TKKMKKTVDAVIKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHKY
RSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEEEESEGDDSEEE
EDDVDEGSESESRSVKVKIKLSRKDKAERGKGRRRTGRSSRPKPVVSDDDSEEDQEEEHS
ASGSEED
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atgtccactcctgacccacccatgggcgggacccctcggccgggaccttccccaggccct
gggccgtctcctggggccatgttagggcctagtcctggaccctcacctggctctgcccat
ggcatgatgggccccagccctgggcccccctcttcgggacaccctctacctccacagggc
ccctcaggttacccgcaggacaacatgcaccagatgcacaagcccatggagggcatgcat
gagaaaggcattcctgaagaccagcgctatggtcagatgaaaggaatgggcatgaggcag
ggtgggcacagcggtatgggacccccacccagccctatggaccaacattctcaaggttac
ccatctcctctgggtggttcggatcacgcccccagcccggtacctgctaatggcccacca
tctggccccatgatgccctctggtcctggtgctatgcctatggaaggcggagacccgcag
gcaatggctcaacagaaccggagtggaggtgcaggtggtgttgcagggccaggacccagc
ggaggacctccaaacgcaggtggccctggtggtgctggcggacccactcctttcaaccaa
aaccaacttcatcagctgcgggcacagatcatggcctataaaatgcttgctcgcgggcag
cctttaccagatcacctacagatggcagtgcagggaaagcgacccatgcccggcatgcag
caggggatgcccaacatgccccctgcttcaggacaaggagcaggacctcctggacctggg
gttcccggtcctggtggacccaactacaatagaccacatggaatggttggaccaaacatg
cctcctccaggaccctctggtgtacctccaggcctgcaaggacaacccaccaatggacca
cctaaaccttggcctgaaggacccatggtgaacgctgctgcccccgcaagtgccccacag
aagctgataccccctcagcccacaggccgcccttctccagcaccaccgtcagttcctccc
gctgcctcccctgtcatgccccctcagacccagtctccaggtcagccagcccagccaccg
atggtgctgcaccagaaacagaaccgcatcacacccatccagaaaccccggggtctagac
ccggtggagatcctccaggaaagagagtacaggttacaggcacgtattgcgcatcgtatt
caggaactggagaatcttccaggctctctggctggagacttgaggaccaaagccaacatt
gagctcaaggcacttagacttctgaactttcagagacagctccgtcaggaagtggtagtg
tgtatgcggcgtgatacggccctggagactgcactcaacgccaaggcctacaagcgaagt
aagagacagtccctgcgcgaggctcgtatcactgagaaactggagaaacagcagaagatc
gagcaggaacgcaaacgcagacagaaacaccaggagtatctcaacagtatcctgcagcat
gcaaaggacttcaaggaatatcatcgttccatcaccgcaaagatgcagaagttgaccaaa
gccgtagccacgtaccacgccaacactgagcgagagcagaagaaggagaatgagcgtatc
gagaaggagagaatgagaaggcttatggctgaagatgaagagggttacaggaagctgatc
gatcaaaagaaggacaaacgtttggcgtacctgctgcagcagaccgatgagtatgtggcc
aatctcacagagcttgtcagagctcacaaagcagctcaggccctcaaagacaagaagaag
aagaagaaaaagaagaagccagagaacgctgaaggtggagctcctgcgcttggtcctgat
ggagagcctctggatgagactagtcaaatgagtgacctgccggtgaaggtgattcacgtg
gacagtgggaagatcctcactggcatggacgctcctaaagctggacaactggatacttgg
ctggagatgaatccagggtacgaggtggccccgcgctcagacagtgaagatagtggctca
gatgaggaagaggatgatgaggaagagcctcagccctctcaggccccgacagaggagaag
aaggtgattcctgatccagacagcgaggatgtttctgaggttgatgctcgtcacattatt
gaacatgccaagcaagatgtagacgatgaatacgggaactctgcattcattcggggcctg
cagtcatattatgctgtggcccacgccgtcacagagaaggtggaaaagcaatcgagtctg
ctagtgaacgggcagctcaaacaatatcagattaaaggtctggagtggctggtgtctctg
tataacaataacctaaatggcattctggctgatgaaatgggtttgggcaaaactatccag
accatcgcactcatcacctacctcatggagttcaaacgcctcaacggacccttccttatc
atcgtccccctctcgactctgtcgaactgggtgtacgagtttgataagtgggctccatct
gtggtgaaagtttcttacaagggctctcctgctgctcgccgtgcgttccttcccattttg
cgcagtggcaaattcaacgtactggtcactacttatgaatacatcatcaaagataagcaa
gtgctggccaagctccgttggaagtacatgatcgtggatgaaggtcaccgcatgaaaaat
caccactgtaaactgactcaggtattaaatacgcactacctggcaccccggcgtgtgctg
ctaactggcactccactgcaaaacaagctgcccgagctgtgggcgctgctcaacttcctg
ctgcccaccatcttcaagagctgcagcacctttgagcagtggttcaacgcgcccttcgcc
atgactggagagaaggtggacctaaatgaagaagaaaccatcctgatcatccgtcgtctg
cacaaagtgcttcggcccttcctgctcaggagacttaagaaggaagtagaggcgcagcta
ccagagaaggtggaatatgtgatcaagtgcgacatgtcggctcttcaaagagtgctgtac
aggcacatgcaggctaaaggagtgctgctcactgacggctctgagaaagacaagaagggc
aaagggggcactaagacactgatgaacactattatgcagctgaggaagatctgtaaccac
ccgtacatgtttcagcacattgaggaatctttctctgagcacctgggcttcactggaggc
atcgttcaggggtctgatttgtaccgtgcctctggtaaatttgagctgctggaccgcatt
ctgccaaagctccgcgccaccaaccacaaagtgctgctcttttgtcagatgaccacactc
atgaccatcatggaggactactttgcttaccgcaacttcaaatacctccgcttagacgga
accactaaggctgaggatcgtggcatgttgctgaagaactttaacgatccttcccatcag
tacttcattttcctgctgagcaccagagcagggggtttggggctgaacctgcagtctgcc
gacactgtcatcatctttgacagcgactggaaccctcaccaggatctacaggctcaggat
cgagcccatcgcatcgggcagcagaatgaggtgcgtgtgctgcgtctgtgcactgtgaac
agtgtggaagaaaagatcttggctgctgccaaatacaaactcaatgtggaccagaaggtc
atccaagccggtatgttcgaccagaagtcctccagccacgagcgcagagctttcctgcag
gccatcctggagcacgaagagcaggatgaggaggaagatgaagtacctgatgatgaaact
gttaatcagatgatcgccagaagcgaggaagagttcgaccactttatgcgcatggatctg
gacaggcgacgtgaggaggctcgtaacccgaagcgcaggccgaggctgatggaggaagat
gagctgcccacctggatcatgaaggacgatgctgaggtggagaggctcacctgtgaagag
gaagaggagaagatgttcggccgtggctcccgccagaggaaggaggtggattacagtgac
tctctgacagagaaacagtggctgaaggccatcgaggaaggcaccctggatgagattgag
gaggaagtgcgccacaagaaaacaacccggaagaggaaacgtgaccgagatcttgacctt
cccggtccggccacacctagctccagtgggcggagcagagataaagatgacgacggtaag
aagcagaagaaacgcggccgccctcctgctgagaaactctcacccaatcctccatcacta
accaagaagatgaagaagactgtggacgcagtgatcaaatacaaggatggcaatgggagg
caactgagcgaggtgttcattcaactgccgtctcgtaaagagctgcccgagtattatgaa
cttatccgcaaacctgtggacttcaggaagatcaaggagcgcatcaggagtcacaagtac
cgcagtctgaatgacctagagaaggacgttatgctgctgtgtcagaacgctcagaccttc
aacctggagggatctttgatctacgaggactctatcgtgctgcagtctgtgttcaccagc
gtgcggcagaagatcgagaaagaggaggaagagagtgagggagatgacagcgaggaggaa
gaggatgatgtcgatgaaggatccgagtctgaatctcgttcagtgaaggtgaagataaag
ttgagtagaaaggacaaggcggagagaggaaaaggacgacgccgaaccggacgcagctcg
cggcctaaacctgttgttagtgatgacgacagtgaggaagaccaggaagaggagcattcg
gctagtggcagcgaggaagattaa
DBGET
integrated database retrieval system
