Danio rerio (zebrafish): 368417 Help Entry 368417            CDS       T01004                                  Symbol thoc2 Name (RefSeq) THO complex subunit 2   KO K12879   THO complex subunit 2 Organism dre  Danio rerio (zebrafish) Pathway dre03013   Nucleocytoplasmic transport dre03040   Spliceosome Brite KEGG Orthology (KO) [BR:dre00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     368417 (thoc2)   09122 Translation    03013 Nucleocytoplasmic transport     368417 (thoc2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:dre03019]     368417 (thoc2)    03041 Spliceosome [BR:dre03041]     368417 (thoc2) Messenger RNA biogenesis [BR:dre03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      368417 (thoc2) Spliceosome [BR:dre03041]  Complex C   Other components    EJC/TREX     368417 (thoc2)  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     368417 (thoc2) SSDB OrthologParalogGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 Motif Other DBs NCBI-GeneID:  368417 NCBI-ProteinID:  NP_001313476 ZFIN:  ZDB-GENE-030616-54 Ensembl:  ENSDARG00000037503 UniProt:  F1R5B5 LinkDB All DBs Position 14:12952634..13047559 Genome browser AA seq 1535 aa AA seqDB search MAALILPFDWLKNWDKSGRNEFLQFFQDLAGKSSGHELVKDLQTAFYELCWHAIQGSLKV DVAASLLADVMELRDDMPSILADVLCILDIETGCLEEKHKRDLFTQLVGACLICIPDGVL KERLDPETLESLGLIKQAQQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL TGNLTSHIVLENIKSLIGCFNLDPNRVLDIILEVYECRSDQDEFFIPLIKSYMCEHQTLC HMLGFKFKFHQEPNGETPSSLYHIAAALLQHDLIALEDLYVHLLPLDSSIVEEHKRDILE AKQIARKLTMVVLPSEKTEDKEKEKDKEEEKNEKPPDNQKLGLLEALLRISDWQHSQSIM DQLPAFYATSHKAIAVALCQLLHLIIDPLYRRAGVPKGAKGSLITPLQNKHAPQPAENFD DLSRDVFTMLCYLGPHLSHDPILFAKMVRLGKSFMKEDSLLGSFLSIADQVLLPSLSLME CNACMSEELWGFFKFFPYQHRYRLYGQWKNETYSNHPLLVKIKAQTVDRSKYIMKRLTKE NVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLITPVVDSLKYLTSLNYDVLAYCIIEA LANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTNQLKAGKSFDLLIL KEVVQKMAGIEITDEMTVEQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHELA LPLCLLMAQQRNGVVFSEGGEKHLKLVGKLYDQCHDTLVQFGGFLASNLSTEDYIKRVPS VDVLCNQLHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNRQQQKVHKYITACEQVMAP VHEAVVSLHLPKVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVNKLKMQIKSIDDNTEM PPNKKKKEKERCTALQDKLQEEEKKQLEHVQRVLHRLKLEKDNWLLAKSTKNETITKFLQ LCIFPRCVFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIYTVASCTENESRRY GRFLCCMLETVTRWHSDRAIYEKECGNYPGFLTIFRASGFDGGNKADQLDYENFRHVVHK WHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALECRVHKICQEEKEKR PDLYALAMGYSGQLKGRKVHMVPENEFHHKEQPVRSTTTGTLQNGPGNIGKTSTTTAASA GKTEDGVVEDSEKSKDKSQAAQKTASKNSTTANKVSSSNGSSTPNSMKGSKEKEDKEKTT KEKKEKKEKNPGSTPEAKTGAKDKQKEERSKEEKPIDSKEKTPKADKDKRKDDKKEEKSK IDGKSIEKDWSKERDASSDSKTKESSKLEKNAGAGSLKSLVPRSEGVESEREQKRRKLDT HSSPSHSSAVKHHPNHTTVLSKIKEKDDEKKESDKSRDRSKEREKKEDRKDRKRDYLNSD REMSQEAKRRKDENGMSSSKHSKSASPSESPHSNDKDNSKRSKSTSKDKSDLAKLEKTSG GKKESRHDKEKSEKKRDSTGTKEEKKHHKSSEKHR NT seq 4608 nt NT seq  +upstreamnt  +downstreamnt atggcggcgctgatcctcccgtttgactggttaaaaaactgggacaaatccggcagaaat gagtttttacagttttttcaagaccttgcagggaaatcaagtggtcatgagttggttaaa gatctgcagacagccttttacgagctttgttggcatgctatccagggcagtctgaaggtg gatgtggctgctagtctcctggctgatgttatggaactgcgggatgatatgccttctatt ttagctgatgttctctgtatattagatattgagactggttgtttggaggagaaacacaaa cgggatctttttacccagttggttggagcctgtttgatctgtattcctgatggtgtacta aaggagagattagatcccgaaacactggagtctctggggctgattaaacaagctcaacag ttcaatcagaagattgtgaaaatcaagaccaaactgttttacaaacagcaaaagttcaat ttgttgcgtgaggagaatgaaggttatgctaaactgatcacagagcttggccaagatctg accgggaatctcaccagtcacatcgtccttgagaacatcaagtcattaataggatgtttc aatttggacccaaaccgtgtgctggacatcattttggaggtgtatgaatgtcgctctgac caggatgagttttttattcctctaatcaagtcctacatgtgcgagcaccagaccctgtgt cacatgctcggtttcaagttcaaattccaccaggagcctaatggagaaacaccatcatct ctgtatcacatcgctgcagctcttcttcagcatgacctcatcgctcttgaagacctctat gttcatcttctcccactggattccagcattgtggaagagcacaagagagatatcctagag gccaagcagattgcccgtaaactcacgatggtggtcctaccctctgaaaagacagaggac aaggagaaagaaaaggacaaggaagaagaaaaaaacgagaagcctcctgataaccagaag ttgggactgcttgaggcactactgaggatcagtgactggcagcactctcagagcatcatg gatcaattgccagctttctatgccacctcccacaaggccatcgctgttgcactgtgccag ctgcttcacctgatcatagatccactctaccgcagggctggagtaccaaaaggtgccaaa ggcagtttgataacacctctgcagaacaaacatgcaccccagcccgccgaaaactttgat gatctatccagggatgtcttcaccatgttatgctacctgggacctcacctgtctcatgat cccatcctttttgcgaagatggtgcggctgggaaagagtttcatgaaagaggactctcta ctgggcagttttctcagtattgctgatcaggtgctgttaccatcactctcgcttatggag tgcaatgcctgcatgtctgaggaactctggggcttttttaaattcttcccttaccagcac aggtatcgtctctatgggcaatggaaaaatgagacatacagcaatcatccactcctggtg aagatcaaggctcagacagtggatagatccaaatacatcatgaagcggctcaccaaggag aatgttaagccctctggaaggcagataggaaagttaagccacagcaaccccaccattctc ttcgattatattctgtctcagatccagtggtacgacaacctcataactccagtggtggac tctctcaaatacttaacatctctcaactatgatgtactggcctattgcattattgaagct ttagccaacccagagaaagagaagatgaaacatgatgacacaaccatttcatcatggttg cagagtcttgcaagtctttgtggagcagttttcaggaaatatcctattgagttagcaggt cttctccagtacgtaaccaaccagcttaaagcagggaagagttttgacctgctgatcctg aaggaggtggtgcagaagatggcaggaattgagataacagatgaaatgactgtggagcag ttggaggccatgacaggtggagaacaactcaaagcagagggtggttactttggacagatt agaaacactaagaaatcttctcagcgtctgaaggatgctcttttggatcatgagctggca ttacctctgtgtctactgatggcccagcagaggaatggagtggtgttctctgagggggga gaaaagcatctaaaacttgtgggaaagctttatgatcagtgtcatgacactcttgtgcag tttggtggctttttggcatctaacctcagtacagaagactacattaaaagggtaccctca gttgacgtcctctgcaaccagttacacacaccacatgatgctgcgtttttcctgtctcgc ccgatgtatgcccatcagatcctgtccaagtatgatgaattgaaaaaggcagagaagggg aacaggcagcagcagaaagtccataagtacatcacagcctgcgagcaggttatggctcct gttcatgaggctgtcgtgtctcttcatttgccaaaggtgtgggatgatcttcgaccacaa ttctacgccacattctggtccctcaccatgtatgacctggcagtaccacacaatgcctac gaccgagaagtcaacaagcttaagatgcagatcaaatccattgatgataacactgagatg cctccaaataaaaagaaaaaggagaaggaacgctgtacagctctgcaggacaagctacaa gaagaggagaagaaacagttggagcatgtgcagagagttctgcatcgtctcaaactggag aaagacaattggttactcgccaaatccactaagaatgaaaccatcactaagttccttcag ctctgcatcttcccccgttgtgtcttctcagccattgatgctgtttactgcgctcgcttt gtggagctggttcaccagcagaaaacgcccaacttctgcaccctactttgctatgacaga gtcttctctgatatcatctatacggtagcgagttgcacagagaatgagtcccgccgatat ggtcgttttttgtgttgcatgttagagactgtcactcgatggcacagtgacagagccatt tatgagaaggaatgtggtaattacccagggttcctgactattttccgagccagtggtttc gacggagggaacaaagcagatcaattggactatgagaattttcgacatgttgtccacaaa tggcattacaagttgactaaagcatctgttcactgtctagaaacgggtgagtacacccac attcgcaacattctgatcgtgcttaccaagatcctaccctggtaccccaaggtgctgaac ctaggccaggctttggagtgtcgcgttcacaagatctgccaggaagagaaggagaagagg cctgatctctatgcattagccatgggttactcaggccaattgaaaggcagaaaagtgcat atggtgcctgaaaatgagttccaccacaaggagcaaccagtacgcagcaccacgaccggc actctgcaaaatggacctgggaatataggcaagacttcaaccactaccgctgccagtgct ggaaaaactgaggatggtgtcgtcgaggactcagagaaatccaaggacaaatcacaggca gcccaaaaaactgccagtaaaaacagcacaacagccaataaagtgagcagcagcaatgga agcagcacgccaaacagcatgaaagggagcaaagagaaggaggacaaagaaaagaccaca aaagagaaaaaggagaaaaaagaaaagaacccagggagcactccagaggccaagacagga gcgaaagacaagcaaaaggaagaaaggtctaaggaagagaagcccatcgacagcaaggag aagacacccaaggcagacaaggacaagaggaaggatgacaagaaggaagagaagagcaaa atcgacgggaaatccattgaaaaagattggtccaaagaacgtgatgcgtccagtgacagc aagacaaaggaaagcagcaagttggagaagaatgctggggctggaagcctgaagtccctt gttcccagatctgaaggagttgagtctgaacgggagcaaaaaagacgaaagctcgacact cactcgtcgccatcacactcctctgcagttaagcaccatcctaaccacaccacagtcctg tccaagatcaaagagaaggatgatgagaagaaagagtctgataaatccagggaccgctcc aaagagagggaaaagaaagaagaccggaaggaccgaaaacgagactacttgaacagcgat cgcgagatgagccaggaagccaaacgccgcaaagatgaaaatggaatgagctcatccaaa cacagcaagagtgccagcccctctgaatcaccacactccaatgacaaggacaatagtaaa cgctccaagtccaccagcaaggacaagagtgatctggccaaattggagaagacctctgga ggcaaaaaggaatccaggcatgacaaagagaaatcagaaaaaaagagagacagcactgga actaaagaggagaaaaaacaccataaatcatcagaaaagcacagataa

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