Danio rerio (zebrafish): 368631
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Entry
368631 CDS
T01004
Symbol
pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
368631 (pms1)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
368631 (pms1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_WDHD1
HMG_box_2
HATPase_c
Motif
Other DBs
NCBI-GeneID:
368631
NCBI-ProteinID:
XP_068079434
ZFIN:
ZDB-GENE-030616-528
Ensembl:
ENSDARG00000000476
UniProt:
A0AB32TWV9
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All DBs
Position
9:complement(42694951..42761638)
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AA seq
896 aa
AA seq
DB search
MKALPPETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSG
IKATDVSVMAVKHYTSKISCHEDLEQLETYGFRGEALASICAISEVIITTKTADDDFSIQ
YSVDHNGQIVSQKPSHLGQGTTVCAANLFKNLPVRRQYYSNTKKCKDELKRVQNLLMAYA
VIKPELRVTLSHNKAVVWQKSRVSDHRTALMAVLGAASVANMLPVQHHQEQPEIHIDGFF
PKPGSDLNSTSSSTTDKSFIFVNSRPVHHKEILKLIKQYYTSAQSNSESVSRRYPTFMMN
ITIPASTVDVNLTPDKTEVMLQNKDEVLLSVETMLISLYGYSNGEENLKTAGNPSDVTSL
DEPKRTSPDISLKHPELPEDSSSNAEKQDGELSLSNTANTSSSSISEDWVINRSDLDSIN
CSVPVDDVVMNSTADLNSNSPKASESDSGPESQISAENWSAGRAFSNQITGEYLEPVKLH
IPKAIEDLGGTEAKSVKSSPSKKPSNVIVEKMAKLTAYELISNRSVRQPSSAFSLFEQDT
RSQVLQENPKASPQDVTAAAKERWESLGEEDRKKYEGKAEKSLNAYNLQRKRAAEGGVQC
GEGKKQMSAESPLNKAQGVKRKAPLANQQALDKLFSSQPSSKRSPAKISKPLPFTIATLK
QSLNLLSEQSSSSVQGLRLVNRLASHGAWVVLCGRKLMLLNPFRVEEALLFKRLLEDNIL
PTVRLQTPVLLTDGVLGGPEYMDVLLNMKKDGPEFNGDISLTDPRLVANGFEIRMISGPQ
SSERHVEVMGMADCMPFFGIGDLREILQAIKARGAKTVAQCRPRKVSHYLESEAVRLARQ
LPLSLSRADVTNTLRRMQQELQDESQVCIHRLPFFHNLVTLPETEQEALQIMSGSQ
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgcttccccccgagactgtgcgtctgctgtgcagctctcaggttattacatct
gtcctgaatgttgtcaaggaactgatcgagaattcacttgatgctggttcctcaagcctt
gaagtcaaactggagaattatggactggatcgcattgaagtgcgagacaatggttctggt
attaaagctactgatgtttctgtgatggctgtaaaacactatacgtctaaaatctcttgc
catgaagacctggaacagctagagacttacggcttcagaggagaagctctggcatccata
tgtgccatctcagaggtgattattactaccaaaactgcagatgacgattttagcattcag
tattcagtggatcacaatggacagatcgtctctcagaagccatctcatcttggccagggc
accacggtgtgtgcggcaaatctgttcaagaaccttccggttagacggcagtattattcc
aacactaaaaaatgtaaagatgagcttaagagggtccagaacttactcatggcttatgct
gtaataaagcctgagttacgggtcacgctgagccacaacaaggctgtggtctggcagaag
tccagggtgtcggatcaccgaactgccctcatggccgtgctcggagcagcgtccgtagcc
aacatgctccccgtccagcatcaccaggagcaaccagagatccacatcgatggattcttt
cccaaaccgggctcagatttgaattccaccagctcctctacgactgataagtcattcatc
tttgtaaacagtcgacctgtgcatcataaagagatacttaagcttatcaagcagtattac
accagtgctcagtctaacagtgaatccgtaagccgccgatatcccacttttatgatgaac
atcaccataccggcctcaactgtggacgttaacctgacacctgataaaactgaagtgatg
ctacagaataaggatgaagttctgttgtcagtggagactatgctaatctccttgtatgga
tactctaatggtgaagagaatctcaaaactgcaggaaatccctctgatgttacttcattg
gatgagcctaaacggacttccccagatattagtttaaagcacccagaactgcccgaggat
tcttcctcgaatgcagaaaaacaggacggtgagctctccttgagcaacaccgcaaacacc
agctcttcttcgatttcggaggattgggtgatcaacagaagtgatttggacagtattaat
tgctcagtacctgttgacgatgtggtaatgaactctacagctgatctgaactccaactct
ccaaaggcgtctgagagtgacagcggtccagagagccagatatctgccgagaactggagt
gcgggcagggccttctccaatcaaatcactggggaatacctagaacctgtcaaactgcac
atcccaaaggcaattgaagaccttggaggaaccgaggccaagagcgtgaagtctagccca
tctaaaaagccctctaacgtgattgtggagaaaatggccaagctgacagcctatgagctt
atcagcaaccgctccgtgcgtcagccctcgtctgccttttcgctgtttgagcaagacacc
agatcgcaggtcctccaggagaacccaaaagccagtcctcaggatgtcacagctgctgcg
aaagagagatgggaaagcctcggggaggaagaccgcaaaaagtatgaaggcaaggccgaa
aagtctctgaacgcctacaaccttcaaaggaagagggcagcggagggaggcgtccagtgc
ggagagggcaagaagcagatgagcgccgagtctccattgaacaaagctcaaggcgtgaag
cgcaaagcccccctcgccaaccagcaggccctggacaaactcttctcctctcagccctcc
agtaaaaggagccctgccaaaatctccaaacccctcccgttcactatcgcaaccctcaag
cagagtcttaacctcctctccgagcagagcagctcaagtgtgcagggcctcaggcttgta
aaccgcttggcttctcacggtgcctgggtcgttttatgcggcagaaagctcatgttgttg
aacccgtttcgagtggaggaggccttgctgtttaaaagacttctggaggataatatactt
ccaaccgtgaggctgcagacccccgtactgctgacagatggggtgctcggtgggccagag
tacatggatgtccttctgaacatgaagaaagatggtcctgaatttaatggagacatcagc
ttaactgatcccaggcttgtggcaaacggttttgagattaggatgatttcaggtccgcag
tcttcggagaggcatgttgaggtgatgggcatggccgactgcatgccgttcttcgggata
ggagacctgagggagattctgcaggctataaaggcccgcggagcaaaaaccgtggcgcaa
tgtagacctcgcaaagtctcacactacctcgagagcgaggcagtgagactagcaagacag
ttacctctcagtctctcaagagccgatgttacaaacacacttcgccgaatgcaacaggaa
cttcaagacgaaagtcaggtctgcattcacaggctgccattttttcacaatctggtgacc
cttcctgaaaccgagcaggaggctctacagatcatgtccggttctcagtaa
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