Danio rerio (zebrafish): 373077
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Entry
373077 CDS
T01004
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03013
Nucleocytoplasmic transport
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
373077 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
373077 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
373077 (thoc1)
03041 Spliceosome [BR:
dre03041
]
373077 (thoc1)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
373077 (thoc1)
Spliceosome [BR:
dre03041
]
Complex C
Other components
EJC/TREX
373077 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
373077 (thoc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
373077
NCBI-ProteinID:
NP_958481
ZFIN:
ZDB-GENE-030826-9
Ensembl:
ENSDARG00000088246
UniProt:
Q7SYB2
LinkDB
All DBs
Position
2:2897120..2914036
Genome browser
AA seq
655 aa
AA seq
DB search
MSPPSHFDFIEARDKFTVATKNAVDTRNCKPLTTAFSHLPGNETEKKATLDQALRGVLEE
QIVNQKVNVDDFLSLIYISIDGVTEGICSATTPFLLLGDVLDCLPLDQCDKIFSFVEENV
STWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQDSTLGQQHTEVKEEGMDVEEGEMGDEDAPAPSSIPIDYNLYRKFWT
LQDYFRNPVQCYDKFSWMTFIKYSDEALAVFKSFKLDDMQASKKKLEEMRTSSGDHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQSLWIEDTTKL
VYQLLKEIPPDGDKFGSMVEHILNTEENWNSWKNEGCPSFVKERPAETKPIRPSRKRQAP
EDFLGKGPDRKILMGNDELTRLWNLNPDNMEACKSENREFMPSLEDFFEEAIEQADPANM
VEDEYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLENMVIKLAKELPKDIPS
EEIKTGEEDDDENGDNLLKDSNDSPSIQSKAVTNSQMDEIAAKLGSQWKTLADHLEMSDK
EIRVIESDSEDVDLQAKMLLVAWQDREGSQATMESLVTALNAAGFNNIADNLSET
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgtctcacttcgacttcattgaagccagagataaatttacggttgccact
aaaaatgcggttgataccaggaactgtaagcctctgaccaccgctttcagtcatcttcct
ggaaacgaaacggagaaaaaggccacacttgatcaagctctgcgtggagttctggaagag
cagatagtgaatcagaaagtgaatgttgacgacttcctttctttaatctacatcagtatt
gatggtgtgactgaaggcatctgctctgctaccactcctttccttctgctgggagatgtg
ctggactgtctgcctctggatcagtgtgacaaaatcttctcctttgtcgaagaaaacgta
tctacttggaagtctaacacattttactctgctgggaaaaactacttgttaaggatgtgc
aacgacctcctcagaagactctctaaatctcagaacacggtgttttgtggacgaatccag
ctgtttttagcacgtctcttccccctgtcggaaaaatcaggactaaacctacagagccag
ttcaaccttgataacatcacagtgttcaacaaaaatgagcaggacagcacactgggacag
cagcacacagaggttaaggaggaaggaatggatgtggaggagggagaaatgggggatgaa
gatgctcctgctccaagctccattcctattgactacaacttgtacagaaaattctggacc
ctgcaggactatttcagaaaccctgttcagtgctacgacaagttctcctggatgactttc
attaagtattcagatgaggcgctagccgtcttcaagagctttaaactggatgacatgcag
gcgtcgaagaaaaagctggaggagatgagaacctcttctggagatcatgtctattttgcc
aagttcctgaccagtgagaaattgatggatcttcagctgagcgacagcaacttcagaaga
cacattctcctgcagtacctcatcctcttccagtatctcaagggccaggtcaagtttaag
agttccagctgtgttttgaatgacgatcaatctttgtggatcgaggacacaaccaaacta
gtctatcagttgctgaaagaaatccctccagatggggacaagtttggatcaatggttgaa
cacatcctgaacacagaggaaaactggaactcttggaaaaatgaaggctgtccgagcttt
gtgaaggagagacccgcagagactaaacccatccggcccagcaggaagagacaagcacca
gaagacttcttggggaagggccctgatcgcaaaatcctgatgggaaacgacgagctcacg
aggctctggaatctgaaccccgacaatatggaggcctgcaagtcagaaaacagggaattc
atgccgtcactggaggatttctttgaagaagccatcgaacaggcagatccagcaaacatg
gtggaggacgaatacaaagtcgtgcgaaactcaaactacggttggcgagcgctgcgcctg
ctgtccaggaggagtccgcacttcttccagcccacaaaccagcagttcaagagtctggcc
gactatctggagaacatggtcatcaaactggccaaagagctgcccaaagacattccttct
gaggtgattaaaaccggagaggaggatgatgatgagaatggagataacctgctgaaggac
agtaatgacagtcccagcattcaaagcaaagccgtgaccaacagccaaatggacgaaatc
gcagcaaagctcggctcccagtggaaaacactggcggatcatctggaaatgagtgacaag
gagatcagagtgatcgagtcggacagcgaggatgtggatctacaggccaaaatgctcctg
gtggcctggcaggaccgagaaggctcccaagcaacgatggagagcctggtcacggccctg
aacgcagccggtttcaacaacatcgcagataatctgagcgaaacataa
DBGET
integrated database retrieval system
