Danio rerio (zebrafish): 378723
Help
Entry
378723 CDS
T01004
Symbol
sox2
Name
(RefSeq) transcription factor Sox-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
378723 (sox2)
Transcription factors [BR:
dre03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
378723 (sox2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
378723
NCBI-ProteinID:
NP_998283
ZFIN:
ZDB-GENE-030909-1
Ensembl:
ENSDARG00000070913
UniProt:
Q6P0E1
LinkDB
All DBs
Position
22:complement(37347893..37349978)
Genome browser
AA seq
315 aa
AA seq
DB search
MYNMMETELKPPAPQPNTGGTGNTNSSGNNQKNSPDRIKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKD
KYTLPGGLLAPGGNGMGAGVGVGAGLGAGVNQRMDSYAHMNGWTNGGYGMMQEQLGYPQH
PSLNAHNTAQMQPMHRYDMSALQYNSMTNSQTYMNGSPTYSMSYSQQSTPGMTLGSMGSV
VKSESSSSPPVVTSSSHSRAGQCQTGDLRDMISMYLPGAEVQDQSAQSRLHMSQHYQSAP
VPGTTINGTIPLSHM
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaaaccgagctgaagcccccggcgccccagcccaacaccgggggc
acggggaacaccaactcctcgggaaacaaccagaaaaacagcccggaccgcatcaagaga
cccatgaacgccttcatggtgtggtcgaggggacagcggcggaaaatggcacaggagaac
cccaaaatgcacaattcggaaataagtaagcgactcggggccgagtggaaacttctgtcc
gagagcgagaagcgaccattcatcgacgaagccaaacgccttcgggctctgcacatgaag
gaacacccggattacaaatacagaccccggaggaaaaccaagaccctgatgaagaaggac
aagtacaccctgccgggcgggctcctggcgccgggcggcaacggcatgggcgccggcgtg
ggtgtaggggccggtttgggcgccggggtcaaccagaggatggacagctacgcgcatatg
aacggctggaccaacggaggctacggcatgatgcaggagcagctgggttacccgcagcac
ccgagtttgaacgcgcacaacacggcgcagatgcagcccatgcaccgctacgacatgagc
gcgctccagtacaactccatgaccaactcgcagacctacatgaacggctcgcccacctac
agcatgtcctattcgcagcaaagcacgccgggaatgacactgggctccatgggctcggtg
gtcaagtccgagtctagttcgagtccgccggtggtcacgtcgtcgtctcattcccgggcc
ggacagtgccaaacgggggacctgcgggacatgatcagtatgtacctgcccggggcggag
gtgcaggaccagagcgctcagagcagactgcacatgtcccaacattaccagagcgcacct
gtgcccggtacgacgattaacggcacgattcccttatcgcatatgtaa
DBGET
integrated database retrieval system
