KEGG   Danio rerio (zebrafish): 378837
Entry
378837            CDS       T01004                                 
Symbol
vps13a
Name
(RefSeq) intermembrane lipid transfer protein VPS13A
  KO
K19525  vacuolar protein sorting-associated protein 13A/C
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:dre04131]
    378837 (vps13a)
Membrane trafficking [BR:dre04131]
 Endosome - Golgi transport
  Rab GTPases and associated proteins
   Rab associated proteins
    378837 (vps13a)
SSDB
Motif
Pfam: VPS13_N VPS13_M VPS13_VAB VPS13_C RRM_fung
Other DBs
NCBI-GeneID: 378837
NCBI-ProteinID: NP_001112365
ZFIN: ZDB-GENE-030926-1
Ensembl: ENSDARG00000039225
UniProt: A0A8M1NGM5
LinkDB
Position
8:complement(51992340..52091696)
AA seq 3194 aa
MVFESVVVDVLNRFLGDYVGNLDSSQLSLGIWGGDAILRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDEVYLLIVPTASIKYDAEKEERQLQESRQRELQRIEE
TKQKAAEKENPKGEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPSVPLSFGISLQ
NLSLQTADQNWNPCLLDEKAKLFFKLVRLDNLFAYWNVSSELYSNHNPEEALRYLKHSVA
IQTAIPQDYHFIFRPISANAKLRMNPRSDVDFSSPKMDLVVNLPEVAVELSRPQYVSILE
LLGSVDMMTRNLPYRKYRPYVVVHTNARQWWRYVITGVLEVNVKPRLHMWSWLHIRRHRQ
HVKKYRELYKNKIISKKPAESLLKELEETERTLDIFNITMARQQAEMEASKAGLRIYRPG
VKVEEEQSQGWFGWMWNWSGEASATQTKDVKTGGFDGLMTPAEKAKLYAAIGYSETAVNP
NLPKNFENMKMNFHLLRLSLSIKESREKAEIIKLSVIDLKAMLTQRPAAQAIKISAQLSS
FEVSGLPREKSAPILLSPRHVDGMKDKSLLNLMFETNPLDARADQRLRIESQPLEIIYDA
MTVNSMSAFFMPPKDLQLDELTNATLMKLEQFRDKTSTGLMYIIETQKVLDLKINLMASY
VIVPENGFYDPKHNLAILDLGHFQMSSQSRADLPQLSAGSSTLEDIMSRAYDSFDVQLSS
LQFLYSKAGGDWKRARPLRQSAFHILEPVDLKVVFSRAMVVTDSRMPKFKMHGELPLLSL
RISDDKVRGVLALLSSIPLPESRPTPQSRNTQATPKASKRGNTPQLTPRRPAIDDLRASI
IYGSEEELFFDAPSSPIEDLPFFEASSDSRHASAADKRLSMVLKDPKKNMTEFLLSFEIN
KLSVQLCRVSNRQEVSVLHLFIDGLGTELKLRTFDMSSYTFLREICLECSEYLDSEDKKV
HLITTLDNTEEDLLTLEYVKADKNAPDFKAMYKNTEQLIKVNFSSLDIHLHTEALLNSMN
FLNNLLPPMKKETQEEQPIIPKEEEEEEEEEEEEEEAKVENSAFEDVVNLHIRADLNCLK
VFIRGEKARISEISIEGLVSEVQMKKKSVEILANLKNIIILDCDKEALYKKAVSIADKEV
FDFRMVNHVDATEGDAYTDMHIVDTSVTLTVGCIQVIFLNKFMSSILAFINNFQEAKNAL
AEVTAQAAEKAATGVLELAERSTRISLDVDIKAPVVFLPQSSVSHNVIVADLGLVTVKNR
FEIVSSPTHTKIPPVMDIMAVGLSDLKMYRTTFTDDKFNSEIQLLKPVNMDLSIKRNLSA
SWYHSIPDIQINAHLKPMSLILSQEDLTVVLKTLSENLSETSDAPPAPSSSDKGDTVSNK
GSQGSGGNTVVTAAVVEGQKSGKLKNTLKLNFKFDSMTLVLYSPNSEQAKLSDSRDESLK
LAEFTLGTISTSVHMFSDSSMKASLKLTNCLLDDKRQGVKMITSRMMAMRQDREDSVMVD
VSYRQSRDGTRLDTLVQDLYLCASMEFLLTVADVFLKALSDGFSGPPKIALWLLKCLAPD
KLVAKTEMNVVVKNPEIVFVADLTRAEAPALVMTTQCELVMKSEPSGQCMTAAISDLKIV
ACPFLREKRENNVTTVLQPCEVFFQSRQSNTEPQCIELSISALTLKVSPIIINTVITIQT
ALSPAAETPQELESPIPQDLWERRSLRDLKLWFLEEEGEEVSTSVTRLIPQGESLKMSIA
SICLTLEAGVGHRTVPMLLAKASFQGDVKDWSTLINLHCHLSMEVNYYNEMMGLWEPLLE
PLDDEDKDGFRPWTLALKMKKKPVVSSGVSDEVDGAVPDYKTVISFTSKDQLNVTLSKCG
LHMLSNLGTAFAEAAKQTAECFQTDQTPFVVKNRLGLAVSVLHSEVFRPIGKESKDRVVE
LPDGESLNLDYTLTAESSDQFSAMTSLSAKNYIQPTPVGHTTASVIPLIKTGRGMYSVMH
NESRVTRFFVCQIYTVEGSKYVKIRSPFQIINHFSVPFRVYEGSVFLGESLPTEEFCVPL
GSYRSLTAFLQPVPDGGEEYEHSESFTYTEVVQKPGKCLEKNCHLRGDSAQILKVNMVPL
ADTVTSHSSEEEFDKPIVLHLWPTVLLRNLLPYPITFKLKGIGDSPSVSLKEGHSSQIHT
AIMDFSVLDLRLLGYLQQDWESQYSLSSEQDEISFIKFRSLAREEETESRPELDIAMHVK
KEEGQVVLAVHSPYWMVNKTSRLLQYKADDIHRKHPKDYDMPLLFSFKPRNFLQNNKIRL
MISESELSDDFSIDTVGSYGDVKCKGRQKDYLVGVKIDASSFSLTRLVTFLPFYMLVNRT
KHVIRVCEEGQENWLSSSVQAAVPFWPERDSKKLRVKVEGSQSSPRAFDFHQPENCLLLH
LDKSLGGIIVDVNLTEHSAVILFSDYHDGAAPFLLINHTKDETLQYHQSSQAEIDELSPG
QAVYYTWAEPTGSRILSWKLGKYKGELKSEEDQLLDVDKEGKLFLVSFYEGLQRVALFTS
EQRIFKKICDSEKIELAQQEISILLQNMGISLVNNNSSQEVAFIGITSSDVVWETKPKKR
SRWKVLSVKEAAVLEQHYRDYMENGPVDSTIIDLDNDYQVLFAANGVDMRIMQPYDAPLR
RNFLPALKVEYSVSARQKTYRVQINRIQIQNQLQGAIFPFVFYPIKPPKSVSMDSEPKPL
ADVSIITRAAGHSDILRIKYFMVLIQEMDLRLDLGFLYAILELFTAEHTSAVTSEQEVEL
FDKDIEYLKTELNHVSATDTSPISLYEYFHISPIKLHLSLSLSSGGEDSNKQERETELIP
VQSLHLLLKSIGATLTDAQDVLFKLGFFELRYQFRTTQQLQWEVVRHYSKQAIKQMYVLV
LGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFMEGMALGVKALVGGAVGGLAGA
ASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSGLREGLTRGGKGLVSGFVSGITGIVT
KPIKGAQKEGAAGFFKGMGKGLVGALTRPTGGIIDMASSTFQGIKRAAELSQDVESLRPP
RFIHEDGVIRPYREREGLGSQMLQSIENGRFAKYRYFAHAKVNESDFLMITKRGIFFVTK
GTFGQLTCEWQYLFDEFTKAPMIVEGRRLRIEAKERVKSVFHAKEFGKIINFKTPELAKW
VLAKLEDARENLPK
NT seq 9585 nt   +upstreamnt  +downstreamnt
atggtgtttgagtcggtggtggtcgacgtgctgaaccggtttctgggggactatgttgga
aacctcgacagctcgcagctcagcctcggcatatggggaggtgatgccatattgaggaac
ctcgagattaaagaaaatgcattgagccagctggacattcctttcaaagtcagagcagga
cacattgggcgtttggagttaaagatcccctggaagaacctgtacactcagtctgtggag
gccacgctggatgaagtttacctgctcatcgtacctactgctagtataaagtatgacgca
gagaaggaggagcggcagctgcaggagtctcggcagagggagctccagcgcatcgaggag
accaaacagaaagcagcagaaaaagagaatccaaagggtgagaagcaggacacatttgtg
gagaaactggtaacacaggtgatcaaaaacctgcaggtcaaaatatccaacattcacgtc
cgctatgaggatgatgtcaccaatcccagtgttcctctctcctttgggatatcattacaa
aacctcagtctccagacggcggatcagaactggaacccctgtcttctggatgagaaagcc
aaactgttttttaagcttgtacgtctggataatctgtttgcgtactggaacgtcagttca
gagctgtactccaaccacaaccctgaggaggctctgcgatacctgaagcacagcgtagcc
atccagactgccatccctcaggattatcacttcatctttcgtccaatatctgccaatgcc
aagttgcggatgaaccctcgctctgatgtagacttctcctcacccaaaatggacctggtg
gtcaaccttcctgaagtggccgtggagctcagccgaccacagtacgtcagcattctggag
ctgttggggtcggtggatatgatgacccgtaaccttccttacaggaagtatcggccatat
gtggtggttcacactaacgctcgtcagtggtggcgatatgtgatcacgggtgttctggag
gtcaatgtgaagcctcgtcttcacatgtggtcttggctgcatattcgtcgacatcggcag
catgtgaaaaagtacagagagctttataagaataaaatcatcagtaagaaaccggcagag
agtctgctgaaggagctggaggagactgaaagaacattagacatattcaacatcacaatg
gcgagacagcaggctgagatggaggcctcgaaggcagggctcaggatttaccggcccggg
gtgaaggtggaggaggaacagtcacagggctggtttggctggatgtggaactggtctgga
gaagccagtgccactcaaaccaaagacgtcaaaactggaggttttgatgggttaatgacg
cctgcagagaaagccaaactatacgctgccatcggatacagcgaaactgctgtcaacccc
aacctgccaaaaaattttgaaaacatgaagatgaatttccatcttctccgcctgtccctg
tccatcaaagagagccgagagaaggcggagatcatcaaactgtctgtcattgacctgaag
gccatgctgactcaaagacccgcggctcaagctataaagatctccgctcagctgtcgtcg
tttgaagtgtccggtctcccgcgggaaaagtcggccccgatcctgctttctccacgtcat
gtggacggcatgaaggataaaagtctgctgaacctcatgttcgagaccaacccgctggac
gctcgtgctgaccagagactgcgcatcgagtcccagccgctggagatcatctatgatgca
atgaccgtgaacagtatgtccgctttcttcatgcctcctaaagacctgcagctggatgaa
ctgaccaacgccacactgatgaagctggagcagttcagagacaaaacctccacaggcctc
atgtacatcattgagacgcagaaagttctggatctgaaaataaacctcatggcctcgtat
gtcatcgtaccggaaaacggcttttatgaccccaaacacaaccttgccattctagatctg
ggtcattttcagatgtcaagtcagagccgagctgatcttcctcagctgtctgcgggcagc
agtactctagaggacatcatgtctcgagcgtacgacagcttcgacgtccagctcagcagt
ctgcagttcctctactccaaagcaggtggagactggaagcgggctcgtccgctaagacag
tctgctttccacatcctggagccagtggacctgaaggtggtctttagcagagcgatggtg
gtcacagactccaggatgcccaagtttaagatgcacggtgagctgcctctgctgtctctg
cggatctctgatgataaagtgcgtggcgttctggctctgctcagcagtattcctctacct
gagagccggcccacgcctcagtccagaaacacgcaggccactccaaaggcctccaagcga
ggaaatacccctcagctcacgccccgaaggccagctatagatgacctgcgtgcgtccatc
atatacggctcagaggaggagctgttctttgacgcccccagttcaccgatcgaggatctg
ccgttcttcgaggcctcgtcggactctcggcatgcttcagcagctgataaacgtctgtct
atggtgctcaaagaccccaagaagaacatgactgagtttctgcttagttttgagatcaac
aagctctcggtgcagctgtgccgtgtgtcgaatagacaggaagtgagtgttctgcatctg
ttcatcgatggattgggaacagagctcaaacttcgcacgtttgacatgtcgtcgtacact
ttcctgcgtgagatctgcctcgagtgctcagaatacttggattctgaggacaagaaagtt
caccttatcaccacgctggacaacacagaggaggatctgctcactctggagtatgtcaag
gcagacaaaaatgcaccagattttaaagctatgtacaaaaatacagagcaactaatcaag
gtgaatttctcctctctggacattcacctgcacacagaggctctcctgaactccatgaac
ttcctaaataatcttctgccaccgatgaagaaggagacccaggaggaacaaccaataatt
cccaaggaggaagaggaggaggaggaggaagaagaagaagaggaggaggctaaagtagag
aattctgcttttgaggatgtggtgaatttgcacatccgcgcagacctcaactgtctgaag
gtgttcatacgaggagagaaagccaggatctctgagatcagcatagagggactggtttct
gaagttcagatgaagaagaagtctgtggagattctggctaacttgaagaacatcatcatt
ctggattgtgacaaagaggcactttataaaaaggcagtgtccatcgctgataaggaggtg
tttgatttccgcatggtgaaccatgtcgatgcaacggagggtgacgcttacacagacatg
cacattgtggacactagcgtaaccctgaccgtgggctgcattcaagttattttcctcaac
aagtttatgtcctcaatactggcatttattaataatttccaggaggctaaaaatgcattg
gcggaggtgacggcccaggcagcagagaaagcagccacgggggttctggagctggcagag
agaagtactcggatctccctggacgtcgacatcaaagctcctgttgtcttcctcccacaa
tcctcagtttcccacaacgtcattgtggcagatctgggtttagtgactgtaaagaaccgc
tttgagatcgtctcctctccaacacacaccaagatccctcctgtcatggacatcatggct
gtcggattgagtgatctgaaaatgtacaggacaacgttcactgatgacaagtttaacagc
gagattcagttgctcaagccagtcaacatggacctgtcaatcaaacgcaatctctccgcc
tcctggtatcacagcatacccgacatccagatcaatgctcacctcaagcccatgagcctg
atcttgagtcaggaggatctgactgtggtgctgaagactctgagtgagaatctgtccgag
acgtctgatgctcctccagctccgtccagctctgataaaggagatacggtttctaacaaa
ggctcccagggttctggaggcaacaccgttgtgaccgcagcagtggtggagggtcagaaa
tcaggcaaactgaagaacaccctaaaactgaacttcaagtttgactccatgacgctggtc
ctctacagcccgaacagcgagcaagcgaaattgtccgactctcgtgatgagagtttgaag
ttggccgagttcacactgggcaccatctccaccagtgtgcacatgttctccgacagctcc
atgaaggcctcgctcaaactcaccaactgtctgctggatgacaagaggcagggagtgaag
atgattacatccaggatgatggcgatgcgtcaggaccgagaggacagtgtgatggtggac
gtcagctaccgccagagtcgggacgggactcgtctggacaccctcgtgcaagacctttat
ctttgtgccagtatggagtttctgctcactgtagctgatgtgtttcttaaagctctgtct
gacggcttctccggtcctccaaagattgctctgtggctgctgaaatgcttggcccccgat
aaattggttgctaaaaccgagatgaatgtggtggtgaagaacccagagatcgtgtttgtg
gcggatctgacgcgtgctgaagctccggctctggtcatgaccactcagtgtgagctggtg
atgaagagcgagcccagcggtcagtgcatgacggccgccatttcagacctgaagattgtg
gcctgtccgttcctgcgggagaagagggagaacaacgtgacgacggtcctacagccctgc
gaggttttcttccagagccgacagtcaaacactgagccgcagtgcatcgagctgtccatc
agcgcactcacgctcaaggtgtctccgatcatcataaacacggtcatcaccattcagacg
gctctaagtcctgccgctgagacgccgcaggagctggagagccccatcccacaggaccta
tgggagcgccgcagccttcgcgacctgaagctctggttcctggaggaggagggcgaggag
gtcagcacgtccgtcacgcgtctcattcctcagggagagtctctgaagatgagcatcgcc
tccatctgcctgacgctggaggccggagtgggacaccgcaccgtccccatgctgctggcc
aaagcctcgttccagggggacgtcaaggactggagcactctcatcaacctgcactgccac
ctcagcatggaggtgaactactataatgagatgatgggtttatgggagccgctgttggag
ccgctggacgatgaggataaagacggttttagaccctggactctcgcactgaagatgaag
aagaagccggtggtcagttctggggtgtctgatgaggtggacggcgctgtgcctgattat
aaaacggtcatcagcttcactagtaaagaccagcttaacgtcaccctgtccaagtgtggt
ctgcacatgctcagtaatctgggaacggcttttgcagaggccgctaaacagacggccgag
tgctttcagacagatcagacaccattcgtggtgaagaatcgcctgggtttggcggtgtct
gtgctgcacagcgaagtgtttcgacccatcgggaaggagtctaaggatcgtgtggtggag
ctcccggatggagagagtctgaatttggactataccctcaccgccgagtccagcgaccag
ttctctgccatgaccagcctcagtgccaaaaactacatacagcccactccagtcggccac
acgaccgcaagtgtgatcccgctcatcaaaacgggccggggcatgtacagcgtcatgcac
aacgagtcccgcgtcactcgcttcttcgtctgtcagatttacaccgtcgagggcagcaaa
tatgtcaagattcgctctcccttccagattatcaaccacttttcagtgccgttccgtgtt
tatgaaggatccgtgtttctgggcgagtctctgccgacagaggagttctgtgtgccgctg
ggatcctacaggtctcttacagcatttctgcagcctgtgcctgatggcggtgaagagtac
gagcactccgagagcttcacctacactgaggttgtccagaaacccggaaagtgtctggag
aaaaactgccatctgcgtggtgacagcgcccagattctgaaggtcaacatggttcctctt
gcggacacagtgacgtcccacagcagcgaggaggagttcgataagcccatcgtactgcat
ttgtggcccaccgtcctgctgcgcaacctgctgccctacccaattactttcaagctaaag
ggcatcggagattccccctcggtgtcgctgaaggagggccactcatcccagatccacacc
gccatcatggacttctccgtgttggatctgaggctgctgggatacttgcagcaggactgg
gagtctcagtacagcctcagcagtgaacaagacgagatcagcttcattaagtttcgctcg
ctcgcacgtgaggaggagactgagagccggccggagctggacatcgctatgcatgtgaag
aaggaggagggtcaggttgtgctggccgtacactcgccgtactggatggtgaataaaaca
agccgactgctgcagtacaaggcggatgatattcatcgcaaacaccccaaggattacgac
atgccgctgctcttctccttcaagccacgcaacttcctgcaaaacaacaagatccgcctg
atgatctcagaaagtgagctgtcagatgatttctccatcgacactgtcgggagttacgga
gatgtcaaatgcaaaggcagacagaaggattacttggtgggagtgaagatcgatgctagc
agcttcagcttgacacgtttggtgacttttctgccattctacatgctggtgaacagaacc
aaacatgtgattcgggtctgtgaggaggggcaggagaactggttaagttcttctgttcag
gctgctgttccattctggccagaaagagactcaaagaagctgagagtgaaggtggagggc
agtcagtcgtcaccacgcgcctttgacttccaccagccagagaactgcctcctgctgcat
ctggacaaaagcttgggtggcatcattgtggatgtgaatctgacagagcattcagctgtg
atcctcttctctgattatcatgatggagccgctcccttcctcctcatcaaccacactaag
gacgagacgctgcagtaccaccagagctctcaggccgagatcgatgaactgagtccaggt
caggcggtttactacacctgggctgaaccaaccggctccaggatcctcagctggaaactg
ggcaaatacaaaggagagctcaagagtgaagaggatcagttgctggatgtggacaaggag
ggcaagttgtttttggtgtcgttttatgaaggcctccagcgtgtggcgctcttcaccagc
gagcagcgcatcttcaagaagatctgcgacagtgagaagatagagctggctcagcaagaa
atcagcatcttgctgcagaacatgggcatttcgctggtcaacaacaactccagccaggaa
gtggccttcattggcatcaccagctctgatgttgtgtgggaaaccaagccgaagaagcgc
agccgctggaaagttctgagtgttaaagaggcagcagttctggagcagcactacagagac
tacatggagaacggcccagtggacagcaccatcatagacctggacaacgactaccaggtg
ttgtttgctgctaacggtgtggacatgaggatcatgcagccctacgatgctccactcaga
aggaacttcctgccggcgttgaaggtggagtacagcgtttcagcccgccagaaaacatac
agagtccagatcaacaggatccagatccaaaaccagctgcaaggagccatattcccgttt
gtgttttaccccatcaaaccgccaaagtctgtcagcatggactcagagccaaaaccgctg
gctgacgtgagcatcatcaccagagcagcaggacactccgacattctgcgcatcaaatat
tttatggtgttgattcaggagatggacctgcggctggatctgggctttctgtatgccata
cttgagctcttcactgctgaacacaccagtgctgtgacgtctgaacaggaggtggagttg
tttgataaagacatagagtatctaaagactgagttaaatcatgtttcagctacagacaca
tctcccatcagcctctacgagtacttccacatctctcctataaagcttcacttgagcttg
tctctgagcagtggtggtgaagacagcaataagcaagagcgcgagacggagctgatccca
gttcagtctctccatctgctgctcaagagcatcggggctacacttacagacgcacaggac
gtcctctttaaactgggcttcttcgagctgaggtatcagtttcgcaccactcagcagctg
cagtgggaggtcgttcgccattactccaaacaggctatcaagcagatgtatgtccttgtt
ctgggtttggacgttcttgggaatccattcgggctgatccggggcctgtctgaaggcgtc
gaggctttcttttacgagccctatcagggtgcaattcagggtccagaggagttcatggag
ggcatggctctcggcgtgaaggctctggttggaggcgctgtgggtggtctggccggagcg
gcgtctcgcatcactggagcgatggctaaaggtgtggcggcgatgacgatggatgaagag
taccagcagaagagacgagaggccatgaacaaacagcccagcggactgagagaaggactg
acacgaggaggaaaaggactggtgtctggcttcgtgagtggcatcacgggcattgtgacc
aaacccattaaaggagctcagaaggaaggagcggcaggtttcttcaagggtatgggtaag
ggtttagttggagctctgaccagaccaacagggggcatcattgacatggccagcagcacc
ttccagggcatcaagagagctgcagagctgtctcaggatgtggagagtctgcgccctcca
cgcttcatccacgaggacggagtgatccggccgtacagagagagagaaggcctcggcagt
cagatgctgcagagtattgaaaacggacggtttgccaagtacaggtactttgctcacgct
aaagtcaacgagtctgatttcctgatgatcactaaaagggggatctttttcgtgacaaag
ggcacgtttggtcagttgacatgtgaatggcagtatctgttcgatgagtttactaaagca
cccatgattgtggaaggcaggagactgcgcatcgaagcgaaggagagagtcaagtcagtg
tttcacgccaaagagttcgggaagatcatcaatttcaaaactccagaattagcaaagtgg
gttcttgccaagcttgaagacgctcgggagaatctgcccaagtga

DBGET integrated database retrieval system