Danio rerio (zebrafish): 387600
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Entry
387600 CDS
T01004
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
387600 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
387600 (xab2)
03041 Spliceosome [BR:
dre03041
]
387600 (xab2)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
387600 (xab2)
Spliceosome [BR:
dre03041
]
Complex B
Other components
Prp19-related factors
387600 (xab2)
Complex C
387600 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
NRDE-2
ARM_TT21
ATG1-like_MIT2
PPR
TPR_1
Tcf25
Motif
Other DBs
NCBI-GeneID:
387600
NCBI-ProteinID:
NP_001038248
ZFIN:
ZDB-GENE-040426-685
Ensembl:
ENSDARG00000007092
UniProt:
Q1LY92
LinkDB
All DBs
Position
3:55855549..55889113
Genome browser
AA seq
851 aa
AA seq
DB search
MPSLSGKADVLFEDDDLPYEEEIIRNPYSVKCWMRYIEHKQSAQKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPGYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPITQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAALRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSMADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDDDIDLELRLARFESLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTIDPMKATGKPHSLWVSFAKFYEDNEQIDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKYAKTIYLLYAKLEEE
YGLARHAMAVYERATAAVEAEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATGNATGTVSDLAPGQSGVDDMRLLEQKAQQLAAEAER
DKPKPKEKILFVRSDTSRSELAELAKQANPDEIDIDDDDDEDEDAEDAEPEEVQLEQKSV
PTAVFGGLKDD
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgccatcgctaagcggaaaggcggacgttttattcgaagatgatgatttgccttatgag
gaagaaatcatcaggaatccatattcagtcaagtgctggatgcgttacattgagcacaag
caaagtgcacagaaatctgtgctcaacatgatctatgaaagagctttaaaggagttgcct
ggcagttacaaattgtggtacaactacctgagagagaggagaaaacaggtgaaaggaaag
tgcatcacggatcctggatacgaggaggtgaacaactgtcacgagagagcgcttgtgttt
atgcataagatgccgaggatatggattgattattgtcagttcatggtgtctcagtgcaaa
attacacggagcagacggacattcgatagagcattaagagctctgcccatcacccagcat
cctcgcatctggcctttgtatcttcgctttgcccggaacctgcctctaccagagaccgct
atccgtgtttaccgccgctacttgaagttgtctcctgagaatgcagaggaatacattgat
tacttgcgctcggttggacgcctggatgaagccgcattacgtctggctgctgtggtcaat
gatgaaaactttgtttctaaagaaggaaagtccaattatcagttgtggcacgagctctgt
gatctcatctcacaaaacccggacaaggtgacctcgctgaacgtgggagcgattatcaga
ggaggcctcactcgcttcactgaccagctgggcaaactctggtgctcaatggccgattac
tacatccgcagtggccacttcgagaaggctcgagatgtttacgaagaagccatcctaaca
gttgtgaccgtgcgagacttcacccaagttttcgacagctacgcgcagtttgaggagagc
atgatcgctgccaaaatggagaccacatctgaactaggccaggatgaagacgatgacatt
gacttggagttgcggttggctcgatttgagtctcttataactcgccggccgcttttgtta
aacagcgtgctgctgcgtcaaaaccctcacaacgttcacgagtggcacaagagagtcaaa
ctctatgagggccagcctcgacagatcatcaacacgtacacggaagctgtgcaaacaata
gatcctatgaaagccactggaaagcctcacagtctctgggtgtccttcgccaaattctac
gaggataatgaacagatagacgatgctcgcactatcttcgagaaggccacaaaggtgaac
tacaagcaggtggatgatctcgctgcagtgtggtgtgaatatggagagatggagctgaga
cacgagaactacgaccaggctttgagaatactaaggaaagctacagcaattccagcgaga
aaagccgagtattttgattcatctgagcctgtgcagaatcgtgtgtataaatccctgaaa
gtgtggtccatgcttgcagacttggaggaaagtcttggcacattccagtccacaaaggca
gtgtatgaccgcatcattgacctccgcatcgccacacctcagatcatcatcaactatgcc
atgtttcttgaagagcacaactactttgaggaaagcttcaaggcatatgagcgtggcatt
gccctcttcaagtggcctaatgttcatgacatctggaacacgtacctcactaagttcatc
gaccgctatggaggcaagaagctggaaagagcccgagatctgttcgagcaagccctggac
gggtgtccagccaaatatgccaaaaccatctacctactgtacgccaagctggaggaggag
tacggtctcgctcgacacgccatggcagtgtatgagagagccactgcggcagtagaggca
gaggaacgccatcagatgttcaacatctacatcaaacgcgcagcagagatctacggagtc
acacacaccagagccatctatcagaaggccattgaggtcctgccggatgaacatgccaga
gacatgtgtctgcgcttcgctgacatggagagcaaacttggggagatcgacagagccaga
gccatttactcttactgctcccagatctgtgacccgagggtgaccgctcatttctggcaa
acgtggaaggagtttgagattcgtcacggtaatgaggacaccatccgagagatgctgagg
attaaacgcagcgttcaggccacgtacaacacgcaggtcaacttcatgtcctctcagatg
ctcaaggccaccggcaacgctactggaacagtgtcagatcttgctccggggcagagtggc
gtggacgacatgaggctgctggagcagaaggcccaacagctggcagcggaggctgagcga
gacaaacccaaacctaaagaaaagattcttttcgtgaggagcgacacctctcgcagtgaa
ctcgctgaactggccaagcaggctaatccagatgagatcgacattgatgatgatgatgat
gaagatgaggatgcggaggacgccgagccagaggaggtgcaactggagcagaaatctgtc
cctactgctgtctttggaggactgaaggacgactga
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