Danio rerio (zebrafish): 393097
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Entry
393097 CDS
T01004
Symbol
dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dre03009
]
393097 (dcaf13)
04121 Ubiquitin system [BR:
dre04121
]
393097 (dcaf13)
Ribosome biogenesis [BR:
dre03009
]
Eukaryotic type
90S particles
Other 90S particles
393097 (dcaf13)
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
393097 (dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_IFT140_1st
KNTC1_N
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
eIF2A
ANAPC4_WD40
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
393097
NCBI-ProteinID:
NP_956423
ZFIN:
ZDB-GENE-040426-703
Ensembl:
ENSDARG00000002267
UniProt:
Q803X4
B2GQH5
LinkDB
All DBs
Position
16:complement(44653266..44673805)
Genome browser
AA seq
445 aa
AA seq
DB search
MKVKVLCRNPDDYVRETTRDIQRVPRNYDPTLHPFEVPREYTRALNATKLERVFAKPFVA
SLDGHRDVISCITKHAKSLSTVISGACDGEVKVWNLPKRECTRTVQAHEGFVRGICSRFC
GTSFFTVGDDKTIKQWNMEAPGYGVREEPINTILGKAVFTGIDHHQREGTFVTCGQTVDI
WDEQRSSPVLSFSWGVDSFSSVRYNPVEPDLLASCASDRSIVLYDTRESAPLRKVIMQLR
SNTLCWNPMEAYYFTCANEDYNLYTYDIRNLDVPVTVHMDHVSAVLDVDYSPTGREFVSA
SFDKTIRIFPKDKGHSREVYHTKRMQHVICVKWSADSKFIMSGSDEMNIRLWKANASEKL
GVLSTREKTAANYNKKLIQKFQHHPQVRRIARHRHLPRDVLKQKRELKEMKEARRRKEQN
VRKHSKPGSVPLLTEKEKHVVKVVE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttaaagtgctttgcagaaacccggacgattatgttcgagagacaaccagagat
atacagcgagtacccaggaactatgacccgaccctgcacccgtttgaggtgcccagagaa
tataccagagccctgaatgccaccaaactggagagggtgtttgccaaaccgtttgtggcc
tcgctcgacgggcacagagatgtcatcagctgcattaccaaacacgccaaaagcctgtcc
acagtcatatctggcgcctgcgatggcgaggtgaaagtgtggaatcttcccaagcgagag
tgtacgaggacggttcaggctcacgaaggatttgtgcgaggaatctgctcccgcttctgt
ggcacctcgtttttcacggtaggagatgataaaactatcaaacagtggaacatggaggct
ccaggatatggagttcgggaggaaccaattaacaccattctggggaaggcggtgttcact
ggcattgaccaccaccaaagggagggcacgttcgttacctgcgggcagacggtggatatc
tgggatgaacagagaagcagccccgtcttgtccttcagctggggtgtggacagtttcagc
agcgtccgctacaaccctgtggagcctgatcttctcgccagctgtgcatcagacagaagt
attgtgttgtatgacaccagagaatctgcaccactcagaaaggttatcatgcagctgaga
agcaatacgctttgctggaacccaatggaagcatattattttacctgcgcaaacgaagac
tacaacctttatacatatgacataaggaatctggatgttcctgtgactgtccacatggat
catgtatccgctgtgctggatgtggattattcacctacagggagggagtttgtatccgcc
agcttcgacaaaaccatccgcatctttcctaaagacaaaggccacagcagggaggtgtac
cacaccaaacgtatgcagcacgtcatctgtgtgaaatggtcggctgacagcaaattcatc
atgagcggctcagacgagatgaacattcgcctgtggaaggccaacgcctcggagaagctc
ggagtgctttctacccgagaaaagactgccgcaaactacaacaaaaagctgatacagaaa
ttccagcaccatccacaggtgagacgcattgcccgccatcgccacctgcccagagacgtc
ctgaagcagaagagagagctgaaagaaatgaaggaagcacgccgcaggaaggaacaaaac
gtccgcaaacacagcaagccaggatctgttcccctgctgacagaaaaggagaaacatgtg
gtgaaggttgtggagtaa
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