KEGG   Danio rerio (zebrafish): 393599
Entry
393599            CDS       T01004                                 
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03420  Nucleotide excision repair
dre04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    393599 (ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    393599 (ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dre04121]
    393599 (ddb1)
   03400 DNA repair and recombination proteins [BR:dre03400]
    393599 (ddb1)
Ubiquitin system [BR:dre04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     393599 (ddb1)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      393599 (ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      393599 (ddb1)
SSDB
Motif
Pfam: Beta-prop_RSE1_1st Beta-prop_RSE1_2nd CPSF_A
Other DBs
NCBI-GeneID: 393599
NCBI-ProteinID: NP_956920
ZFIN: ZDB-GENE-040426-1272
UniProt: Q6PGT6
LinkDB
Position
18:54134350..54146880
AA seq 897 aa
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYAVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVQFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAVAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVGVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSESSRD
TDDMLVLSFVGQTRVLMLSGEEVEETELQGFVDNQQTFFCGNVAHQQLIQITSVSVRLVT
QDSKALVSEWKEPQGRNISVASCNNTQVVLAVGRVLYYLQILSGELKQISSTEMEHEVAC
LDITPLGERTADSCICAVGLWTDISARLLKLPCFTPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDIQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDASGTTAAVRPSASTQALSSSVSSSKLLPSSTSPHET
SFGEEVEVHSLLVVDQHTFEVLHAHQFLQNEYALSMVSCKLGRDPAVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEK
NT seq 2694 nt   +upstreamnt  +downstreamnt
atgtcctacaactacgtggtgaccgcgcagaagcccacggcggtgaacgcctgcatcacg
ggccacttcacctccgccgaggacctgaacctgctcatcgccaagaacacgcggctggag
atctacgcggtgacggcggaggggctgcggccggtcaaagaggtcggcatgtacggcaag
atcgcggtgatggagctgttcaggcccaagggagagagcaaagaccttctgttcattctg
acggccaaatacaacgcctgcatcctggagtacaagcagagcggagacagcatcgacatc
atcacccgagcccacggcaacgtgcaggaccgcattggccggccgtcggagaccgggatc
atcggcatcgtggacccagagtgccgcatgatcgggctgcggctgtacgacgggctgttc
aaggtgatcccgctggaccgagagaacagggagctcaaggccttcaacatccggctggag
gagctgcaggtcatcgatgtccagttcctgtacggctgccaggcccccaccgtctgcttc
atataccaggacccgcagggccgacacgtgaagacatacgaggtttccctgcgggagaag
gagttcaataaagggccctggaagcaggagaacgtggaggccgaggcatcgatggtcatt
ccagtcccggagccgttcggcggagccatcatcatcgggcaggagtccatcacctaccac
aatggagataaatacctggccgttgctccgcccattatcaagcaaagcaccatcgtgtgc
cacaaccgtgtggacccgaacggctcgcggtacctgctgggcgatatggagggccggctg
ttcatgctgctgctggagaaggaggagctgatggacggagccgtggtgctgaaggacctg
catgtggagctgctgggagagacgtccatcgccgagtgtttgacctatctggataacggg
gtggtgtttgtgggatccagactgggagactctcagctggtgaagctgaacgtggacagt
aatgaccagggctcgtatgtgggggtgatggagaccttcactaacctgggcccaatagtg
gacatgtgtgtggtggacctggagcggcaagggcaaggccagttggtgacgtgctccgga
gcgtttaaggaaggctctctcaggatcatccggaacggtattgggatccacgagcacgcc
agcatcgacctgccgggaatcaaaggtctgtggcctcttcgctcagagtccagcagagac
actgatgatatgctggttttgtctttcgttggtcagaccagggtgctgatgctgagtgga
gaggaggtggaggagacggagctgcaggggtttgtggataaccagcagaccttcttctgt
gggaatgtggcgcatcagcagctcatacagatcacctcggtgtcggtgcggctggtcact
caggacagtaaggctctggtcagcgagtggaaggagccgcagggcaggaacatcagcgtg
gcgtcctgcaacaacacacaggtggtgctggcggtgggcagagtgctgtactacctgcag
atcctgagcggagaactcaagcagatcagctctacagagatggagcatgaggtggcgtgt
ctggacatcactcctctgggcgagcgcactgctgactcctgcatatgtgctgtggggctc
tggaccgacatctccgcccgcctgctcaagctgccctgcttcacccctctgcacaaggag
atgctgggcggagagatcatccctcgctccatcctcatgaccaccttcgagggcagccac
tacctgctgtgtgcgctgggagacggagcgctcttctacttcggcctggatattcagaca
ggtgttctgagcgagcgtaagaaggtgactctcggcactcagcccaccgtcctgcgcacg
ttccgctcgctctccacctccaacgtgttcgcctgctccgaccggcccaccgtcatctac
tccagcaaccacaagctggtgttctccaacgtcaacctgaaggaggtcaactacatgtgc
ccgctcaactctgagggctacccggacagtctggctctggccaataacagcactctcacc
atcggcaccattgacgagatccagaagctccacatccggactgtgccgctctacgagtcc
cccaagcggatctgttatcaggaggtgtctcagtgttttggagttttgtccagtagagtt
gaaatgcaggacgccagtggaaccacagcagccgtacggcccagcgccagcacacaggct
ctgtccagcagtgtgagctccagtaagctgttccccagcagcacgtcgccccatgagacg
tcattcggggaggaggtggaggtgcacagcttactggtggtggaccagcacacgtttgag
gtgctgcacgctcatcagttcctgcagaacgagtacgccctcagcatggtgtcctgcaaa
ctgggtcgagatcctgctgtttacttcatcgtcggcacggcgatggtttacccagaggag
gcggagccaaagcagggccgcatcatcgtcttccactatactgacggtaaactgcagacg
gtggcggagaaggaggtgaagggtgccgtttactccatggtggagttcaatggtaaactg
ctggccagcatcaacagcacggtgcgtctgtacgagtggaccgcagagaaggag

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