Danio rerio (zebrafish): 393600
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Entry
393600 CDS
T01004
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dre03016
]
393600 (cdkal1)
Enzymes [BR:
dre01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
393600 (cdkal1)
Transfer RNA biogenesis [BR:
dre03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
393600 (cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
DUF1450
Motif
Other DBs
NCBI-GeneID:
393600
NCBI-ProteinID:
NP_956921
ZFIN:
ZDB-GENE-040426-1443
UniProt:
Q6PG34
LinkDB
All DBs
Position
16:1422..53136
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AA seq
547 aa
AA seq
DB search
MMALVCDTAVDDIEDMVRITDVTPLQRQAARKSVVPRARKHKQETGEQMQTDSVIPGMQK
VWLKTWGCSHNSSDGEYMAGQLAVAGYQITEDSSDADLWLLNSCTVKSPAEDHFRNAIRK
AQEQNKKVVLAGCVPQAQPRMDYIKDLSIIGVQQIDRVVEVVDEAIKGHSVRLLGQKKEK
GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPVEELVERVRQS
FQEGVCEIWLTSEDTGAYGRDIGSDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
SRILQHPRVFSFLHVPLQSASDSVLMEMRREYCCADFTHLVDYLKERVPGITIATDIICG
FPGETDEDFEQTLALVRRYRFPSLFINQFYPRPGTPAALMQQLPAHVKKQRTKELSALFH
SYRPYDHKMGEQQQVLVTEESFDSQYYVAHNKFYEQVLVPKRPEYLGKMVQVEVYECGKH
YMKGRPLEEAPLRTAYTTAPLLKGQVSGHTQAGVCEPQCWMPDGMRILAVVLLLSAVLLA
LLMEKLL
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgttggtgtgtgacactgctgtggatgatatcgaggatatggtgagaatcact
gacgtcacaccactgcagcggcaggcggcccgcaagagtgtggttcctcgcgcacgcaaa
cacaagcaggagacgggagagcagatgcagaccgacagtgtgattcccggcatgcagaag
gtgtggctgaagacctggggctgctcacacaacagctcagatggagagtatatggcgggt
cagctggcggtggcaggataccagatcacagaggactcgtctgatgcagatttgtggctc
ctgaacagctgcacagtcaaaagccctgcagaggatcacttcaggaacgccatcaggaag
gctcaagagcagaataagaaggtggttttggctggatgtgtgccgcaggctcaaccccgc
atggactatataaaggacctaagcatcattggggtgcagcagattgacagagtggtggag
gttgtggacgaggccattaaaggtcactctgtacgtttgctgggtcagaagaaggagaag
ggcaagcgtctgggcggagcgcgactagatttgccaaagattcggaaaaatcctctgatt
gagatcatttccatcaacacaggctgtctgaatgcctgcacctactgtaaaactaagcac
gctcgtggagatctggccagttacccggtggaggagctggtggagcgggtcagacagtcc
ttccaggagggtgtgtgtgagatctggctgaccagtgaggacaccggtgcgtatggacgg
gacatcggctctgatctgcccacactgctgtggaggctggtggaggagatccctgaggga
gccatgctgcgcctgggcatgaccaaccccccctacatcctggagcacctggaggagatg
tcccgtatcctgcagcacccgcgcgtcttctccttcctgcatgtgccgctgcagtctgcg
tctgacagtgtgctgatggagatgcggagggagtactgctgcgccgacttcacacacctg
gtggactacctgaaggagagggttccaggcatcaccatagcgacagacatcatttgtggt
ttcccgggagagacggatgaggacttcgagcagacgctggcgctggtgcggcgctaccgc
ttccccagcctgttcatcaaccagttctacccgcgaccgggcaccccggcggccctgatg
cagcagctgcccgcgcacgtgaagaaacaaagaaccaaagaactgtcggcgctcttccac
tcctacaggccctacgaccacaagatgggcgagcagcagcaggttctggtcactgaggag
tcctttgattcgcagtattacgtcgcacacaacaagttctatgagcaggtgctggtgccc
aagcggcctgagtatctgggtaagatggtccaggtggaggtgtacgagtgcgggaaacac
tacatgaagggccgaccactggaggaggcgccactgcgcaccgcatacaccactgcacca
ctgctgaagggacaggtgtcgggacacacacaggccggtgtgtgtgagccgcagtgctgg
atgccggacgggatgaggattctggctgtggttctgcttctgtctgcggttctgctggcg
ttactgatggagaaactgctctga
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