Danio rerio (zebrafish): 393856
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Entry
393856 CDS
T01004
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1B
KO
K13126
polyadenylate-binding protein
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03015
mRNA surveillance pathway
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
393856 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
393856 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
393856 (pabpc1b)
03041 Spliceosome [BR:
dre03041
]
393856 (pabpc1b)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
393856 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
393856 (pabpc1b)
Spliceosome [BR:
dre03041
]
Complex C
Other components
Complex C specific factors
393856 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_7
RBD_RDR6
RRM_occluded
RRM_3
YflT
HTH_58
Motif
Other DBs
NCBI-GeneID:
393856
NCBI-ProteinID:
NP_957176
ZFIN:
ZDB-GENE-050308-1
Ensembl:
ENSDARG00000021140
UniProt:
Q6P3L1
LinkDB
All DBs
Position
19:complement(13226410..13250230)
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AA seq
634 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFER
HEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWTTQGVRPQHFQNMPGTMRPSAPRPQTFSTMRPASQVPRMMSTQ
RVATQTMGPRPSTAAAAASAPPVRGVPQYKYAPSVRNPQQHMNTQPQVTMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKEAAQKTVTNSTGVPSV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcctagttaccccatggcctccctctatgtcggggacctgcaccag
gacgtgactgaagccatgctgtacgagaagttcagtccggccggtgccatcctctccatc
cgcgtgtgcagggatatgatcactcgcaggtcgctcggttatgcctatgtcaacttccag
cagcctgcagacgctgaacgggctctagacacaatgaactttgatgtcatcaaaggtaga
cctgtccgcattatgtggtctcagcgtgacccttctctgaggaagagcggcgtcggaaac
atcttcattaaaaatctggataagtctattgacaacaaagctctttatgacaccttctca
gcgtttggcaacatcttgtcatgcaaggtggtttgtgacgagaatggctcaaagggctac
ggctttgtgcactttgagacccaggaggctgctgaaagagccattgagaaaatgaacggc
atgttgctgaatgacagaaaagtgtttgtcggccgcttcaagtctcgcaaggagagggag
gctgagcttggtgcaagagccaaagagtttaccaacgtctacattaaaaactttggagaa
gacatggatgatgacaaacttaaggatatcttcagcaaatatggtaatgccatgagcatc
cgtgtcatgactgatgaaaatgggaaatccagaggcttcgggtttgtgagttttgaaagg
catgaagatgcccaaagggctgtagacgagatgaatggcaaagaaatgaatggaaagctc
atctatgtgggtcgtgctcagaaaaaagtggagcgtcaaactgagctcaagcgcaaattt
gaacagatgaagcaagaccgcatgacacgctaccagggtgtcaatctctatgtgaagaat
ttggatgatggtattgacgatgagcgtctgcgcaaagagttctcccccttcggtacaatc
accagtgccaaggtcatgatggacggtggtcgcagcaaaggcttcggttttgtctgtttc
tcttctcctgaggaagccactaaagctgtgactgagatgaatggccgtattgtggccacc
aagccactgtatgtggctcttgctcagcgtaaagaggaacggcaggcccatctcaccaat
cagtacatgcagaggatggccagtgtccgtgcagtgccaaaccctgttatcaacccctac
caacctgcacctccatcaggatatttcatggctgccattccacaggcccagaaccgagct
gcatactaccctaccagtcaactggcccagctcagaccaagcccccgctggaccacacaa
ggcgtccggcctcaacacttccagaacatgccaggcacgatgcgcccctctgcccccaga
ccccagaccttcagcaccatgcgaccagcatcccaggtgccccgcatgatgtccactcag
cgtgtggctactcagaccatgggtcctcgtccttccactgcagccgctgcagcttctgct
ccaccagtgcgtggcgtgcctcagtacaaatacgcccccagtgtccgcaacccccagcag
cacatgaacacacagcctcaggttaccatgcagcagcctgccgtgcatgtgcaaggacag
gaaccgttgacggcctccatgctcgccgctgcgcctccacaggaacagaagcagatgctg
ggtgaacgcctcttcccacttatccagaatatgcatccaagcctggctggcaagatcact
ggtatgttgctggaaatcgacaattctgagctcctccatatgctggagtctccagagtcc
ctgcgctccaaggtcgatgaagctgtggctgtactccaggctcaccaggctaaagaagcc
gctcagaaaacagtcacaaactctactggtgtgccaagcgtttaa
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