Danio rerio (zebrafish): 393897
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Entry
393897 CDS
T01004
Symbol
vldlr
Name
(RefSeq) very low-density lipoprotein receptor precursor
KO
K20053
very low-density lipoprotein receptor
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dre04131
]
393897 (vldlr)
Membrane trafficking [BR:
dre04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
393897 (vldlr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Mucin
Motif
Other DBs
NCBI-GeneID:
393897
NCBI-ProteinID:
NP_957217
ZFIN:
ZDB-GENE-040426-803
Ensembl:
ENSDARG00000006257
UniProt:
E7FF13
LinkDB
All DBs
Position
10:15255012..15305144
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AA seq
866 aa
AA seq
DB search
MVRSMLGLLLLLPVCFQLWGFSRASRAECEQSQFQCGNGRCIPSVWQCDGDMDCSDGSDE
TSCVRKTCAEVDFVCRSGQCIPKRWQCDGEPDCEDGSDESIEMCHTRTCRVNEFSCGVGS
TQCIPVFWKCDGEKDCDNGEDEINCGNITCAPLEFTCSSGRCVSRKFVCNGEDDCGDGSD
EQDCAPSSCSPSEIPCGNNTCIPRSWLCDDDVDCQDQSDESPERCGHNPTPPAKCSPSEM
QCGSGECIHRKWRCDGDPDCKDGSDEKNCSARNCRPDQFKCDDGSCIHGSRQCNGFRDCV
DGTDEVNCKNLTQCNSSDQFKCRSGECIEMSKVCNKVRDCPDWSDEPIKECNMNECLINN
GGCSHICRDLTIGFECDCTPGLQLIDRKTCGDVNECLNPGICSQICINLKGGYKCECHNG
YQMDPTTGVCKAVGKEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFIQQMIF
WADLGQKAIFSTVLDKQDESHKKVIDDVQMPVGIAVDWIYKNIYWSDLGSKSITVANFNG
TKKKVLFNSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGNDRQVLVETDIQWPNG
ITLDLIKGRLYWVDSKLHMLCSVDLNGDNRRKVLQSPDYLAHPFALTVFEDRVFWTDGEN
EAIYGANKFTGSDVTLLASNLNEPQDIIVYHELIQLSGTNWCNEKMENGGCSFMCLPAPQ
INKHSPKYTCVCPEGQTLASDGLRCRAEATSAAPQDGGQVTTRPSHPKGKAKGNLSTSIH
EVNTSARGSAAAWAILPVLLLAMAAAGGYLMWRNWQIKNKKSMNFDNPVYLKTTEEDLNI
DISRHSASVGHTYPAISMVNTEDDLS
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggtcaggtctatgctggggcttcttctcctcctgccagtatgttttcagctgtgggga
ttttcgcgcgcttcccgagcagaatgtgagcagtctcagttccagtgtggaaatggccgg
tgtattccgtctgtgtggcaatgtgatggggacatggactgttcggatggcagcgacgag
acgtcctgcgtgaggaaaacttgtgccgaggtggactttgtctgtcgcagtggacaatgc
atccccaaaagatggcaatgtgacggggaacctgactgcgaggacggctcagacgaaagc
atcgaaatgtgccatacgcgaacctgtcgagtgaatgaatttagttgtggtgtcggctcc
acacagtgcattcccgtcttctggaagtgtgacggtgagaaagactgcgacaacggagag
gacgagattaattgtggtaacattacatgtgcccctctggagttcacctgttccagtggc
cgctgtgtttctcgtaaattcgtctgcaatggtgaagatgactgcggtgacggcagcgat
gaacaggactgcgctccttcctcctgcagcccaagcgaaatcccttgtgggaacaatacg
tgtattcctagaagctggttatgtgacgatgatgtagactgccaagatcagtcggatgag
tccccagagcgctgcggccacaacccgacgcctccggccaaatgttcgcccagcgagatg
cagtgcggctctggcgaatgcattcaccggaagtggcgctgcgacggagacccagattgc
aaggatggcagcgacgagaaaaactgctctgcccgtaactgcagacctgaccaattcaag
tgtgatgacggcagctgtatccatggcagccgacagtgcaatggattcagagattgtgtg
gatggaacagatgaagtcaactgcaaaaacttaactcaatgtaacagttctgaccagttc
aagtgtcgaagtggagagtgcattgagatgagtaaagtgtgtaataaggtccgtgactgt
cccgactggagtgatgaacccatcaaagagtgcaatatgaatgaatgcttgatcaataac
ggaggctgttcgcacatctgtcgagacttgacgattggcttcgaatgcgactgcacaccg
ggactccagctcatcgatcgcaagacctgcggtgatgtcaacgagtgcctcaacccaggg
atatgtagccagatatgtataaatcttaaaggaggatacaaatgcgagtgtcacaatggt
taccagatggaccccaccactggagtgtgcaaagctgttggtaaagagccctgtcttatt
ttcaccaatcgaagagacatccgtaaacttggcctggagcgccgtgaatatactcagatt
gtggagcaactgcggaacactgtagctcttgatgccgacttcattcagcagatgatattc
tgggctgacctgggccagaaggccatttttagcacagtgttggataagcaggatgaaagt
cataagaaagtgattgacgatgttcagatgcctgttgggattgcagtagactggatttac
aaaaacatctattggtcagatctgggaagtaagagcataactgtggccaacttcaatggg
accaagaagaaggtgctttttaacagcggcctgaaggaaccagcctctattgctgtagac
cctctatcagggttcctctattggtcagactggggtgagccagctaagattgagaagtct
ggtatgaacgggaatgacagacaggtccttgttgagacggacattcaatggcccaatgga
atcactcttgatttgatcaagggaaggctctactgggtggattccaagctgcacatgctt
tgtagcgtagacttgaatggagacaaccgtcggaaggtgctacagtctcctgattacctg
gcacatccttttgctcttactgtttttgaggatcgagtgttctggacagatggtgaaaat
gaggcaatctatggggcgaacaagttcacaggatctgatgtaactttgctggccagcaac
ctcaatgaaccccaggatatcatcgtgtaccatgagctaattcagctgtctgggactaac
tggtgtaatgaaaagatggagaatggaggctgttccttcatgtgtctaccagctccacaa
attaacaaacattcccctaaatacacctgcgtgtgtccggaaggccaaaccctggcctca
gatggcttgcgctgcagagcagaggcaacttctgccgcccctcaagatggagggcaggta
actactcgccccagtcacccaaaaggtaaagcaaaaggaaacctaagcacctccatacat
gaggtcaatacatcagccagaggatctgctgctgcctgggcgattctacctgtgttatta
ttggccatggcagctgctggtggttacttaatgtggcgcaactggcagatcaaaaacaag
aagagcatgaacttcgacaacccagtgtatctgaagaccacagaggaagacctcaatatc
gatatcagtagacacagcgcttctgtaggccacacgtaccctgctatctcaatggtaaac
acagaagatgacttgtcataa
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