Danio rerio (zebrafish): 393900
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Entry
393900 CDS
T01004
Symbol
ercc2
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03022
Basal transcription factors
dre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
393900 (ercc2)
09124 Replication and repair
03420 Nucleotide excision repair
393900 (ercc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
393900 (ercc2)
03036 Chromosome and associated proteins [BR:
dre03036
]
393900 (ercc2)
03400 DNA repair and recombination proteins [BR:
dre03400
]
393900 (ercc2)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
393900 (ercc2)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
393900 (ercc2)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
393900 (ercc2)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
393900 (ercc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
SesA
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
393900
NCBI-ProteinID:
NP_957220
ZFIN:
ZDB-GENE-040426-997
Ensembl:
ENSDARG00000021985
UniProt:
F1Q5E7
LinkDB
All DBs
Position
15:complement(23680018..23692359)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ
KTYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPE
VSSLRFGKEVDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDL
KDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID
NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE
TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD
IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSPITLISHFATLVSTYSKGFTIIIEP
FEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQTVIITSGTLSPLDIYPRILDFRPVTMAS
FTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT
SYMYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTIDETVQLSKHF
LRQMAQPFRREDQLGLSLLTLEQLQSEDMLQKIAQIAHQA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgaatatcgacgggttattagtctactttccgtatgactacatctatcccgaa
caatactcgtatatgcttgagctgaagaggacgctggatgcaaagggtcatggagttctg
gagatgccctcaggaacaggaaaaactatttctcttctttcgctcatcgttgcttaccag
aagacttaccctttagaagtcaccaagctcgtgtactgctctcgcacggtgcctgagata
gagaaggttgtggaggagctaaggaaactgatggattattactcaaagcaaacgggagta
aaaaacgacttcctcgcccttgcactttcctcgaggaaaaacctgtgcattcatcctgag
gtgagctctctgcgttttggaaaagaagtagatggaaaatgtcacagtctgacagcatcg
tatattcgagcgcagcatcagagtaacccaaatcagcctgtctgccagttttatgaggaa
tttgataatgtaggcagacaggtgcccattccccctggtatatataatttggacgatctg
aaggactttgggcgtagaaaaggctggtgtccttacttcctggcacgttacgcacttctt
cacgcaaacatagtagtgtacagctaccattacttactagatccgaaaatcgcagacttg
gtctcgaaagagctcgcaaagaaatcagttgtcgtgttcgatgaggctcacaacattgat
aatgtgtgtattgattccatgagcgtcaacatcaccaggaggacactggatcgctgccaa
accaatgtggaaacccttcaaaacaccattagcagaattaaagaaacagatgctgccaaa
cttcgagaagaatacagaagattagtcgagggtcttaaagaagctaatgttgccagagaa
actgacatttatctgtccaatccagttctgcctgatgaaatcctgcaagaggctgttcct
ggcagcatccgcactgcagagcactttgtaggctttatgaagcgcttcctcgagtatctg
aaggcccgtttgcggatccatcatgtggtgcaggaaagtgctcctcagttcctcaaagac
atctttgagaaggtctgcattgaccgcaaacccctgagattttgtgcagaacggttacgg
tcactgctgcggactctggagattgcggacatcgccgacttctcacccattactctgata
tcacactttgccactcttgtcagcacctacagcaaaggtttcaccatcatcatagagccc
tttgaagacaaaacgccgacaatagcaaatcctgttcttcacttcagttgtatggatcct
tctatcgccataaagccagtgtttggccgttttcagacagtcattatcacatcagggaca
ctctctccgctggacatctacccacgcatccttgatttccgccctgtcactatggcatcc
ttcaccatgacactggcacgaacctgcttgtgcccgcttattgttggtcgagggaatgat
caggtggcgatgacctccaagtttgagaccagagaagactttgctgtgattcgtaattat
ggaaacctgctgctggaaatgtccgctattgtcccagatgggattgtggccttctttacc
agttacatgtacatggagaacattgtagcctcatggtatgaacaggggatccttgaaaac
atccaaaggaataagctcattttcatagaaacccaggacgcagcagagaccagcatggct
ctggaaaagtatcaggaggcctgtgagaacggcagaggagcaattctgctctcggtggca
cgagggaaggtgtcagaggggattgactttgttcatcattttggccgtgctgtcatcatg
ttcggagtgccttatgtttacactcagagccgaatcctcaaggcacgactggagtacctc
agagaccagtttcaaatccgggagaatgactttctgacatttgatgccatgcgccacgcg
gctcagtgtgtaggcagagccatccgaggaaaaactgactacggcctgatgatctttgcg
gataagcgctacgcacgagcggataagcgaggaaagctgccccgctggatccaggaacac
cttacggacggaagcctaaatctgaccatcgatgagactgtgcagttatccaaacacttc
ctgcgacagatggcacagcctttcagacgggaggatcagttgggtctgtctctgctgact
ctggaacagctccagtctgaggatatgttgcagaaaattgcccagatcgctcaccaagcc
tga
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