Danio rerio (zebrafish): 393917
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Entry
393917 CDS
T01004
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03013
Nucleocytoplasmic transport
dre03015
mRNA surveillance pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
393917 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
393917 (ddx39b)
03015 mRNA surveillance pathway
393917 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
393917 (ddx39b)
03041 Spliceosome [BR:
dre03041
]
393917 (ddx39b)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
393917 (ddx39b)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
393917 (ddx39b)
Spliceosome [BR:
dre03041
]
Complex C
Other components
EJC/TREX
393917 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
393917 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
393917
NCBI-ProteinID:
NP_957237
ZFIN:
ZDB-GENE-040426-1259
Ensembl:
ENSDARG00000036069
UniProt:
Q7SXU7
LinkDB
All DBs
Position
19:29756605..29774519
Genome browser
AA seq
435 aa
AA seq
DB search
MTENDVDNELLDYEEDEVDAGGAGDAGLGHSDGIISIRKEGVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKESPHVVVGTP
GRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDARTLNDVQDRFEVNISE
LPEEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacagagaacgatgttgataacgagctgttggactatgaggaggatgaggtagatgct
ggtggtgcaggggacgcaggccttggacacagcgatggcatcatatccatcaggaaagaa
ggcgtcaaagggtcatatgtgtccatccactcctcagggttcagagatttccttctcaaa
ccagaactcctaagagcgatagtggactgcggatttgaacatccatctgaggttcagcat
gaatgcattcctcaggccatcttgggaatggatgttttatgtcaggccaagtctggaatg
gggaagacagctgtctttgtgttggccacccttcagcagctggagcctgtgactggtcag
gtgtcagtgctggtgatgtgtcacacacgagagctggcattccagatcagtaaagagtac
gagcgcttctctaaatacatgcccagtgtcaaggtggcagtattctttggtggtttgtcc
ataaagaaggacgaggaggtgctgaagaaggagagtcctcatgtggtggtgggaactcct
ggacggattctagctctgtcccgcaacaagagtctcaacctgcgccacatcaaacacttc
attctggatgaatgtgataagatgctggagcaacttgacatgcgtcgggatgtccaagaa
atctttcgaatgacccctcatgagaagcaggtcatgatgttcagtgccaccctgagcaaa
gagatccgtcctgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgac
gagaccaagttgacacttcacggcctccagcagtactacgtcaagctgaaggacaacgag
aagaacaggaagctctttgatctcctggatgtgttggagttcaaccaggtggtgatcttt
gtgaagtcggtgcagcgttgtattgctctcgctcagttgctggtggagcaaaatttccct
gccattgccattcatagagcaatgccccaagacgaaagactagctcgatatcagcaattt
aaagatttccagagaaggatcctggtagccactaatctgtttggccgaggtatggacatc
gaaagagtcaacattgcctttaactacgacatgcctgaagactctgacacgtacctgcac
agggttgcacgggctggcagattcggaacaaaaggtctggccatcacctttgtgtccgat
gaaaatgatgcccgcactttgaatgacgttcaggacaggtttgaggtgaacatcagtgaa
cttccagaggagattgacatctcatcatacattgaacaaacacgataa
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