Danio rerio (zebrafish): 393929
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Entry
393929 CDS
T01004
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03013
Nucleocytoplasmic transport
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
393929 (upf3b)
03015 mRNA surveillance pathway
393929 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
393929 (upf3b)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
393929 (upf3b)
mRNA cycle factors
P-body specific factors
393929 (upf3b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
393929
NCBI-ProteinID:
NP_957248
ZFIN:
ZDB-GENE-040426-1630
Ensembl:
ENSDARG00000000489
UniProt:
F1QNX7
LinkDB
All DBs
Position
14:complement(37878453..37890234)
Genome browser
AA seq
467 aa
AA seq
DB search
MKEDKENTRPREKKVEIKCDENDKQEKPCKEKKEAMTKIVIRRLPPTLTKEDLEEQLQPL
PELDYLEFFSSDTSLFPHLFARAYLNFKNQDDIVLFRDRFDGYVFIDNRGQEYPAIVEFA
PFQKVAKKRSKKKDAKSGTIDDDADYKKFLEFYNGDEEKSPSNPEILLEEIEAKTKELSS
KKTTPLLDFLKNKQRIREEKKEERRRREIERKRLREEERRKWREEDRRKRKEAEKLKKVE
KASEKDKDQHKDEQPKIKLLRKPEKADDGEAEKPKDKPKKQDRERQKEDRPSGGDLKKRQ
NGEHREEKGGKPEDVGHKEYRDRDGERERDRDRERERRQKEKERIRRQDEERRRRREHQD
GENTYRKREEEGKKDKERVWEKRKNEHTGESSGSARPEKSSRDSKKEESARKDRLRNKDR
PAIQLYQPGSRNRTRGGGGGGGTGGDGPAAEKRAEREAKKNQEKGAE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaagaaaacacgcgtcccagagaaaagaaagttgaaataaaatgcgat
gaaaatgataagcaagagaagccctgtaaagagaagaaggaggctatgacaaagattgta
atccgacgtctccctccgactctaactaaggaagacttagaggaacaactgcagcctcta
ccagagctcgattacctggagtttttctctagtgataccagtcttttcccccacctattt
gcaagagcatacctgaacttcaaaaatcaagatgacattgttctcttcagagaccgcttc
gatggctatgtcttcattgataatcgaggacaagaatatccagccattgttgagtttgct
ccattccagaaagttgctaagaaaaggagcaagaagaaggatgccaaaagtggaacgatt
gatgatgatgctgattacaaaaagtttttggagttctacaatggtgatgaggaaaaaagt
ccttccaatcctgagattttactagaggaaattgaggccaagacaaaggaactcagctct
aagaaaacaacacctctcttggacttccttaagaataaacagaggatcagagaagagaag
aaggaagagcggagacgacgagagatagaacgcaaacgcttgcgagaggaagaacggcgt
aagtggagagaggaggacagaagaaaaagaaaagaggctgagaaactgaaaaaagtggaa
aaggcatttgagaaggataaggaccaacataaagatgagcagccaaaaatcaagctcttg
agaaaaccagagaaagcagatgatggtgaaactgaaaagccaaaagacaagcccaagaaa
caagacagagagagacagaaggaagatcgaccttctggaggagacctgaaaaagcggcag
aatggtgaacacagagaggagaaagggggaaaacccgaggatgttggacataaagagtac
cgagatcgtgatggagaaagagagcgagaccgggacagagagagagagcgaagacagaag
gagaaagagcgcatcagaagacaggatgaggaacggaggaggagaagggaacaccaggat
ggagaaaacaactacagaaaaagagaggaggaagggaagaaagataaggagcgcgtttgg
gagaaaaggaagaatgaacacactggagagtcctctggcagtgctcgtcctgaaaagtca
tcaagggacagcaaaaaagaggaaagtgccagaaaggaccgtctgagaaataaggatcga
cctgcaattcagctgtaccagcccgggtctaggaatcgtactcgaggaggaggaggtgga
ggaggaacaggaggagatggaccagcagcagaaaagagagctgagcgggaggccaagaaa
aatcaagaaaaagcagccgagtga
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integrated database retrieval system
