Danio rerio (zebrafish): 393951
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Entry
393951 CDS
T01004
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
393951 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
393951 (prpf8)
Spliceosome [BR:
dre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
393951 (prpf8)
Complex C
U5 SnRNP specific factors
393951 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
393951
NCBI-ProteinID:
NP_957270
ZFIN:
ZDB-GENE-030131-577
Ensembl:
ENSDARG00000026180
UniProt:
A0A8M2B4I2
LinkDB
All DBs
Position
15:complement(30755349..30768821)
Genome browser
AA seq
2342 aa
AA seq
DB search
MAAPFPYRGLPGPMPPGVPPPPPAVAPVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGF
VDAQKEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQI
RDVPVLYHITGAISFVNEIPWVIEPVYISQWGTMWIMMRREKRDRRHFKRMRFPPFDDEE
PPLDYADNILDVEPLEAIQMELDPDEDSSVTDWLYEHQPLKDTTKYVNGTTYRRWQFTLP
MMSTLYRLANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDW
NEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFD
PLINPISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNL
RSGRTRRAIDVPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLF
RSFKATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTK
ERKKSRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYR
YKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLG
NLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHL
SESWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCK
KNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYK
HDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKE
VGIEFMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVY
KWCQGINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKN
NVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLS
FQDTATESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKC
WPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMCGFE
CRILPKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGS
TTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPP
VVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQ
PWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYD
KGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGT
YFPTWEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQV
QLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKET
IHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKFWIDIQLRWGDYDS
HDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKI
MKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKT
FEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLP
VEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQ
MVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTD
EEWIKVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQT
KEQSQLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVS
SDDIKETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGT
HQTVHLPNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTII
ITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMV
PGQVSWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDM
YA
NT seq
7029 nt
NT seq
+upstream
nt +downstream
nt
atggcagctcctttcccctacagaggtcttcctggaccaatgcctccaggtgttcctcca
cctcctcctgctgttgctccagtgccagattatatgactgaggagaaactgcaagagaaa
gctcgtaaatggcagcagctgcaggccaagcgctactctgagaaaaggaaatttggcttc
gtggatgctcagaaagaggacatgccaccagaacatgtgcgcaaaattatcagggatcat
ggtgacatgacgaacaggaaatttcgtcatgataaaagagtctacctaggggccctgaag
tatatgccccatgcagtgctcaaactgctggagaacatgccaatgccctgggagcagatc
agagatgtacctgtgctctaccacatcacaggcgctatatctttcgtgaatgaaatccct
tgggttattgagccagtgtacatttctcagtggggcacaatgtggatcatgatgcgtcgt
gagaagagagacagacggcacttcaagcgcatgcgtttcccgccatttgatgatgaagag
cctcctttggattatgcagacaacatcctggatgtggagcctctggaggcgatccagatg
gagctggaccctgatgaggactcttctgtcacagactggctctatgagcatcaacctctg
aaagacaccaccaaatacgtgaatgggaccacatacagacgatggcaattcactttgcca
atgatgtccactctgtatcgattggctaatcagctgctgacagacttggtggatgacaat
tacttttacttgtttgacttgaaagctttcttcacctctaaagctttgaacatggccatt
cctggaggacctaaatttgagccacttgtcagagacattaacctccaggatgaagactgg
aatgagttcaatgacatcaacaagatcatcatcagacagccaatcaggacagaatacaaa
attgcattcccttacttgtacaacaatctgccacatcatgtgcacctcacctggtaccat
acaccaaatgtggtgttcatcaagactgaagatcctgatctacccgccttctactttgac
cctctgatcaaccccatctctcataggcactcagtcaagagccaagagccactgccagat
gatgatgaggagtttgaacttcctgagtatgtagagccgttcctgaaggagacgccgctt
tacactgacaacactgctaatggaatcgctctgttgtgggcacctcgtccattcaatctc
cgctctggaagaaccagacgagccattgatgttcctctcgtcaaaaactggtatcgtgag
cactgtcctgcaggccagcctgtgaaggtgcgtgtgtcttaccagaagcttctgaagtac
tatgtgttgaatgctctaaaacacagaccaccaaaggcacagaaaaagagatacctgttc
cgctctttcaaggccaccaaattcttccagtcaacaaagctggactgggtagaagtcgga
ctccaggtgtgccggcagggctacaacatgctgaacctgctgattcacagaaagaacctg
aactacctgcacttggactacaacttcaacttgaagcctgtaaaaaccctcacaacaaag
gaacgtaagaagtctagattcggaaatgcgtttcacttgtgccgtgaggttctgcgcttg
agcaagctggtggtggacagtcatgtacagtacaggcttggaaatgttgatgctttccag
cttgctgatggcttgcagtacatctttgcccatgtgggtcaactgactggcatgtaccgc
tacaagtacaagctcatgaggcagatcagaatgtgcaaagacctgaagcatctcatctac
tatcgcttcaacacaggcccagttggaaaaggtccaggctgtgggttctgggcaccagga
tggagagtctggctgttcttcatgagaggcattacccctcttttggagcggtggctcggc
aatcttctggctaggcagtttgagggtcgacactctaagggtgttgccaagactgtgacc
aaacagcgtgtggaatctcactttgatctggagctgagagctgctgtgatgcatgacatc
ctggatatgatgcctgagggtatcaagcaaaacaaggccagaaccatcttgcagcacctc
agtgagtcatggagatgctggaaggccaacattccttggaaggttcctgggcttccaact
cccatcgagaacatgattcttcgttacgtgaaggctaaagctgactggtggaccaacacg
gctcactacaaccgtgagagaatcagaagaggagcaactgtggataagactgtgtgcaag
aagaacttgggacgtctcactcgactctacctaaaagcagagcaggagagacagcacaat
tacctgaaggatgggccttacatcacagctgaggaggccgtggccatctacaccaccaca
gtgcactggctggagagtcgtcggttctctccgattcccttccctcctctctcctacaag
catgacaccaagctgctcattctggcgttggagagactcaaggaagcttacagtgtgaag
tctaggctgaaccagtcacagcgtgaggagttgggtctgattgagcaggcctatgacaac
cctcatgaggctctgtccagaatcaaacgtcacctcctcactcagagagccttcaaagag
gttggcattgagttcatggacctttacagtcacttggtgccggtttatgatgttgaacct
ttggaaaagatcactgacgcatacctggatcagtacctgtggtacgaggcagacaaacgt
aggcttttcccaccctggatcaaaccagctgacacagagccaccaccactgctggtgtac
aaatggtgccaaggaatcaacaacttgcaggatgtatgggagacagcagagggtgaatgt
aatgttatgctggagtctcgctacgagaagatgtatgagaagattgatctgacgctgctg
aacaggcttctgcgtctcattgttgatcacaacattgctgattacatgacagctaaaaac
aacgttgtcattaactataaggacatgaaccatacaaactcgtacggtatcattcgtggc
ctgcagtttgcctctttcattgtgcagtactatggacttgtgatggacctgctggtgctg
ggtctgcacagagccagtgagatggcaggacctcctcagatgcctaatgatttcctcagc
ttccaggatacggccactgagagcgcgcatcccatccgtctgtactgcagatatatagac
cgcattcatatcttcttcaggttctctgctgatgaggccagagatttgatccagaggtac
ctgactgagcacccggaccccaacaatgagaacattgtggggtacaacaataagaaatgc
tggcctcgagatgctaggatgagactgatgaaacatgatgtcaacttgggtcgtgctgtg
ttctgggacatcaaaaatcgcctccctcgttcagtgaccacaattcaatgggagaacagt
tttgtgtctgtgtacagcaaggacaaccccaatctgctctttaacatgtgtggctttgag
tgtcgcatactcccgaagtgtcgcactagttatgaggagttcactcacaaagatggtgtt
tggaatttgcagaatgaggtaacaaaagaaaggacagcacagtgtttcctgcgtgtagat
gatgagtccatgcaaaggttccacaatagagtgcgacaaattttgatggcttctgggtcc
accactttcaccaagatcgtgaataagtggaacactgctctgattggtctgatgacctac
ttccgtgaagctgtggtcaacactcaagagcttctggacctgttggtgaagtgtgagaat
aagatccaaacccgtatcaagattgggttgaactccaaaatgcccagccgttttcctcct
gtggtgttttatacccctaaggagttgggtggattgggaatgctttccatgggacacgta
ctgatcccacagtctgaccttaggtggtccaaacagaccgatgtgggtatcactcatttc
cgctctggtatgagtcatgaggaggatcagcttattcctaatctgtaccgctacatccag
ccatgggagagtgagttcattgattctcagagagtttgggctgaatatgccctcaagcga
caggaggccattgctcagaacagacgtttgacactggaggatttggaggactcctgggac
agaggtattccacgtatcaacaccctcttccagaaggacagacatactcttgcttatgat
aagggctggagagtcagaacagacttcaagcaataccaggtgctgaagcaaaatccattc
tggtggactcaccaaaggcatgatggaaaactatggaatttgaacaattaccgaacagac
atgatccaggcacttggaggggttgaaggcattcttgagcacacactgttcaagggtacc
tacttccctacctgggagggtctcttctgggagaaggccagtggttttgaagagtctatg
aaatggaagaagctcactaatgctcagagatctggtctgaaccagattcctaaccgacga
ttcaccttgtggtggtctcctaccatcaacagagccaacgtatatgtaggtttccaagtg
cagttggacctcactggaatcttcatgcatggtaaaatcccaaccctcaagatctctttg
atccagatcttcagagctcacttgtggcagaaaattcatgagagcattgtcatggatctc
tgtcaggtgtttgaccaagagctggatgctttggagattgagactgtccaaaaagagaca
atccatcccaggaagtcttacaagatgaattcctcctgtgcggacattcttctgtttgcc
tcctacaagtggaatgtctcacgcccctcacttctagcagattccaaggatgtaatggac
agcaccaccacacagaaattctggattgacattcagctcagatggggtgactatgactct
catgacattgagagatatgccagggccaagttcttggactacaccactgacaacatgagt
atttacccatcacccactggagttctgattgccattgatctggcctacaatcttcacagt
gcctatggaaactggtttcccggagccaagcctctgatccagcaggcaatggcaaagata
atgaaggccaatccggctctgtatgtgttaagagagcgaatccgcaagggtctgcaactc
tactcttcagagcccactgagccttacctgtcctcccagaactatggagagctcttctca
aaccagatcatctggtttgtagatgacaccaatgtgtacagagtcaccatccacaagacc
tttgaaggtaacttgaccaccaaacccatcaatggagccattttcatcttcaaccccaga
actggacagcttttcttgaagatcattcacacttctgtatgggctggacaaaagcgtctt
ggacagttggctaagtggaagactgctgaagaagtggctgccctgatccgatcgctgcct
gttgaagagcagcccaaacagattattgtgaccaggaagggcatgttggatcctcttgag
gtgcacttgctggacttccccaacattgtaatcaaaggctctgagctccagctccccttc
caggcctgtttgaaagtggagaagtttggagacctcattctgaaggccacagagcctcag
atggtcctgttcaatctgtatgacgactggctgaagaccatctcctcttacactgcattc
tctcgtttgattttgatcctgagagcgcttcatgtcaacaatgatcgtgccaaagttatt
ctgaaacctgacaagaccaccattaccgagccccaccacatctggcccactctgacggat
gaggagtggatcaaagtggaggtgcagctcaaagatctcatcctggctgactatggcaag
aagaacaatgtgaatgtggcatctttgactcagtctgaaatcagggacatcatcctggga
atggaaatctctgctccatcccagcagagacagcagatcgctgagattgagaagcagacc
aaagagcagtctcagcttacggccactcagactcgcacagtcaacaaacacggagatgag
atcatcacctccaccaccagcaactacgagacgcagaccttctcttccaaaactgaatgg
agagtaagggcgatctctgctgcaaacttgcacttgcgtaccaaccacatctatgtgtca
tcggatgacatcaaagaaacgggctacacttacatcctgcccaagaacgttctgaagaag
ttcatctgcatctcagatctgcgtgctcagattgcaggttacctgtatggaaccagccct
ccagataaccctcaggtgaaggagatccgctgtattgtgatggtgccacagtggggtaca
catcagaccgttcaccttcccaaccaactgccacaacacgagtacttgaaggaaatggag
cctcttggatggatccatacacagcccaatgaatcgccccagctctctcctcaggatgtc
accacccatgcaaaggtcatggctgacaacccatcctgggatggcgaaaagactatcatt
atcacttgcagcttcacccctggttcctgcacactgacggcctacaagctgactcccagt
ggatatgagtggggtcgacaaaacacagataagggtaataaccccaaaggttacttgcct
tcacactatgaaagggttcagatgcttttgtctgaccgtttccttggcttcttcatggtg
cctggccaagtctcctggaactacaacttcatgggtgtccgccatgatcccaacatgaag
tatgacctgcagttggccaatccgaaagagttctaccatgaagtccacagaccgtctcac
ttcctcaattttgcttctctgcaggagggtgaaatctacaatgctgaccgtgaggatatg
tatgcataa
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integrated database retrieval system
