KEGG   Danio rerio (zebrafish): 393973
Entry
393973            CDS       T01004                                 
Symbol
rae1
Name
(RefSeq) mRNA export factor
  KO
K14298  mRNA export factor
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    393973 (rae1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    393973 (rae1)
   03036 Chromosome and associated proteins [BR:dre03036]
    393973 (rae1)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     393973 (rae1)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    393973 (rae1)
SSDB
Motif
Pfam: WD40 Beta-prop_EML_2 WDR55 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WD40_RFWD3 Beta-prop_IFT140_1st eIF2A Beta-prop_EIPR1 NBCH_WD40 Beta-prop_Nup120_160 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 393973
NCBI-ProteinID: NP_957292
ZFIN: ZDB-GENE-040426-1029
Ensembl: ENSDARG00000007196
UniProt: Q7ZWF0
LinkDB
Position
6:22326613..22334062
AA seq 368 aa
MSLFGTNTGFGSGGTGVFGSTTTDSHNPMKDVEVTSPPDESISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLNSNQA
IQIAQHEGPIRTIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQSKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKK
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgagtttgtttgggacaaacacgggctttgggtctggagggaccggtgtatttggcagt
accaccacagacagccataatccaatgaaggatgttgaagtaacttcgccacccgatgag
agcataagctgcttggcatttagtcctcctacgatgcctgggaactttctcatcggaggt
tcgtgggccaatgacgtacggtgttgggaagtgcaagataatggtcagactgtccctaaa
gcccaacagatgcacactggcccagtactggatgtgtgctggagtgatgatggtagtaaa
gtctttacagcttcttgtgataaaactgccaagatgtgggatctgaacagcaatcaggcc
attcagatagctcaacatgaaggtccaatcaggacaattcactggattaaagcaccaaac
tacagctgtattatgactggcagttgggacaaaactttgaagttttgggatacacgttcc
ccaaacccaatgatgtccctccagatgccagagaggtgttattgtgccgatgtggtatat
cccatggctgttgtagccactgcagaacgtggtcttattgtttatcagttagaaaatcag
ccttcagagtttcgacgtatagagtcacctcttaagcatcagcaccgctgtgtggctatc
tttaaggacaaacagagtaagcctactggatttgccctgggcagcattgagggacgagtt
gccattcattacataaatccacctaacccagccaaggacaatttcacctttaagtgccac
aggtccaatggaaccaatactgccacaccccaagatatctatgctgtgaatgctatctcc
tttcaccctgtccatggcacactggcgacagtaggctctgatgggcgcttcagtttctgg
gataaagatgcccgtactaagctgaagacttctgaacaattagatcaaccaataacagct
tgttgcttcaatcacaatgggaatatatttgcctatgcatcaagttatgactggtccaag
ggacatgaatattacaatccccagaaaaagaattacatcttcttgcggaatgcagctgag
gaactgaaaccacggaacaagaaatga

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