KEGG   Danio rerio (zebrafish): 394002
Entry
394002            CDS       T01004                                 
Symbol
cul4a
Name
(RefSeq) cullin-4A
  KO
K10609  cullin 4
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03420  Nucleotide excision repair
dre04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    394002 (cul4a)
  09124 Replication and repair
   03420 Nucleotide excision repair
    394002 (cul4a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dre04121]
    394002 (cul4a)
   03400 DNA repair and recombination proteins [BR:dre03400]
    394002 (cul4a)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    394002 (cul4a)
Ubiquitin system [BR:dre04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     394002 (cul4a)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      394002 (cul4a)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      394002 (cul4a)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   394002 (cul4a)
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 394002
NCBI-ProteinID: NP_957321
ZFIN: ZDB-GENE-040426-1357
Ensembl: ENSDARG00000096578
UniProt: Q7T2C1 A0AB40EBV9
LinkDB
Position
1:157742..168647
AA seq 745 aa
MMAEDVQHQQKSSFNGLSKSAKAGASKKLVIKNFKDRPKLTDSYTEDTWLKLRDAVSAIQ
NSTSIQYNLEELYQAVENLCSYKVSPMLYKQLRQVCEEHVQAQIHQFREESLDSLSFLKR
MNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPSIWDTGLELFRTHIVSDAAVQSRTVQ
GILEQVERERSGETVDRSLLRSLLGMLSDLQVYKDSFEQRFLSETTRLYAAEGQRLMQER
DVPEYLHHVARRLEEENDRVISYLDQSTQKPLIATVEKQLLGEHMTTILQKGLRTLLDEN
RVCELTLLYELFSKVKGGLTALLQSWREYIKSVGAETVCSPERDREMVQELLDFKDQMDS
VTQSCFQRNESFINAMKEAFENFINQRPNKPAELIAKYVDSKLRAGNKEATEEELERILD
KIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGM
FKDMELSKDIMIQFKQYMQNQTEPSNIELTVNILTMGYWPSYTPMDVHLPAEMVKLQEVF
KLFYLGKHSGRKLQWQPTLGHAVLKTEFKEGKKELQVSLFQTLVLLMFNESDECSVEEIR
VATGIEEGELKRTLQSLACGKARVLNKTPRGKEVEDGDRFHFNSDFRHKLFRIKINQIQM
KETVEEQVSTTERVFQDRQYQIDAAVVRIMKMRKTLSHNLLVSELYNQLKFPVKPADLKK
RIESLIDRDYMERDKENSNQYHYVA
NT seq 2238 nt   +upstreamnt  +downstreamnt
atgatggcagaagatgttcagcaccagcagaagtccagctttaatggactcagcaaatcc
gccaaagcaggagcgtcgaagaagctggtcatcaagaactttaaagacagacccaagctg
acagactcctacactgaagacacgtggctgaagctcagagatgctgtgagcgccattcag
aacagcacatccatccaatacaacctggaggagctttaccaggctgtggagaatctgtgt
tcgtataaagtgtcgccgatgttgtacaagcagctgcgacaggtgtgtgaagagcacgtg
caggcgcagattcaccagttcagggaagagtctctggacagcctgtcgttcctgaagagg
atgaaccgctgctggcaggaccactgcagacagacgatcatgatccgcagtattttcctc
ttcctggaccgaacgtacgtcctccagaactcgctgctgccgtccatctgggacacaggg
ctggagctgttccgcacacacatagtgagtgacgcggcggttcagagccggacggtgcag
gggatcctggagcaggtggagcgcgagcgcagcggggagacggtggaccgcagtctgctc
aggagcctactgggcatgctctctgacctgcaggtgtataaggactcgttcgagcagagg
tttttatcagagacgacccgtctgtacgccgctgagggacagagactgatgcaggagaga
gacgttccagagtatctccatcatgtggcgcggcgtctggaggaagagaacgaccgcgtc
atcagctatctggaccagagcacacagaagcctctgatcgccacggtggagaagcagctg
ctgggagaacacatgaccaccatcctgcagaaaggcctgcggacgctgctggatgagaac
cgtgtgtgtgagctgacgctgctctatgagctcttcagtaaggttaaaggcggcctgacg
gcactgctgcagtcctggagagaatacatcaagagtgtgggagcggagacggtgtgttct
ccggagcgggacagggagatggtgcaggagctgctggactttaaggatcagatggactcg
gtgacgcagagctgcttccagaggaacgagagcttcatcaacgccatgaaggaggccttc
gagaacttcatcaaccagagacccaacaaacccgcagagctcatcgccaaatatgtggac
tctaagctgcgagcgggaaataaagaagccacagaggaggagctggagagaatcctggac
aagatcatgatcatcttccgcttcatccacggtaaggatgtgttcgaggcgttctacaag
aaggatctggccaagcgtctgctggtgggcaagagcgcttcagtggatgcagagaagtcc
atgctctccaaactcaaacacgagtgtggagcagcgttcaccagtaaacttgagggaatg
ttcaaagatatggagctctccaaagacatcatgatccagttcaaacagtatatgcagaat
caaactgagcccagcaacattgagctgaccgtcaacatcctgactatgggctactggccc
tcgtacacaccgatggacgtccatctgcctgctgagatggtgaagctgcaggaggtgttt
aagctcttctatctgggtaaacacagcggacggaaactacagtggcagccgacacttgga
cacgcagtgctgaagacagagtttaaagagggtaagaaggagctgcaggtttctctgttc
cagactctggttctgctgatgttcaatgagtctgacgagtgttcagtggaggagatcaga
gtggctacaggcatcgaggagggcgagctgaagcgtacgctgcagtctctggcgtgtggt
aaagctcgagtgctcaataagaccccccgagggaaagaggtggaggacggagaccgcttc
cacttcaacagcgacttcagacacaaactgttccgcatcaagatcaaccagatccagatg
aaggagacggtggaggagcaggtgagcaccaccgagcgtgtgtttcaggaccgtcagtat
cagatcgacgcggcggttgtgcgcatcatgaagatgaggaaaacactcagccacaacctg
ctggtgtctgaactatacaaccagctcaagttccctgtcaagccggcggatctgaagaag
cgtatcgagtccctcatcgaccgggattatatggagcgcgacaaagaaaactccaaccag
taccactatgtggcgtag

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