Danio rerio (zebrafish): 394002
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Entry
394002 CDS
T01004
Symbol
cul4a
Name
(RefSeq) cullin-4A
KO
K10609
cullin 4
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03420
Nucleotide excision repair
dre04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
394002 (cul4a)
09124 Replication and repair
03420 Nucleotide excision repair
394002 (cul4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dre04121
]
394002 (cul4a)
03400 DNA repair and recombination proteins [BR:
dre03400
]
394002 (cul4a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dre04147
]
394002 (cul4a)
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
394002 (cul4a)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
394002 (cul4a)
TCR (transcription coupled repair) factors
Cul4-CSA complex
394002 (cul4a)
Exosome [BR:
dre04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
394002 (cul4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
Motif
Other DBs
NCBI-GeneID:
394002
NCBI-ProteinID:
NP_957321
ZFIN:
ZDB-GENE-040426-1357
Ensembl:
ENSDARG00000096578
UniProt:
Q7T2C1
A0AB40EBV9
LinkDB
All DBs
Position
1:427845..438958
Genome browser
AA seq
745 aa
AA seq
DB search
MMAEDVQHQQKSSFNGLSKSAKAGASKKLVIKNFKDRPKLTDSYTEDTWLKLRDAVSAIQ
NSTSIQYNLEELYQAVENLCSYKVSPMLYKQLRQVCEEHVQAQIHQFREESLDSLSFLKR
MNRCWQDHCRQTIMIRSIFLFLDRTYVLQNSLLPSIWDTGLELFRTHIVSDAAVQSRTVQ
GILEQVERERSGETVDRSLLRSLLGMLSDLQVYKDSFEQRFLSETTRLYAAEGQRLMQER
DVPEYLHHVARRLEEENDRVISYLDQSTQKPLIATVEKQLLGEHMTTILQKGLRTLLDEN
RVCELTLLYELFSKVKGGLTALLQSWREYIKSVGAETVCSPERDREMVQELLDFKDQMDS
VTQSCFQRNESFINAMKEAFENFINQRPNKPAELIAKYVDSKLRAGNKEATEEELERILD
KIMIIFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGM
FKDMELSKDIMIQFKQYMQNQTEPSNIELTVNILTMGYWPSYTPMDVHLPAEMVKLQEVF
KLFYLGKHSGRKLQWQPTLGHAVLKTEFKEGKKELQVSLFQTLVLLMFNESDECSVEEIR
VATGIEEGELKRTLQSLACGKARVLNKTPRGKEVEDGDRFHFNSDFRHKLFRIKINQIQM
KETVEEQVSTTERVFQDRQYQIDAAVVRIMKMRKTLSHNLLVSELYNQLKFPVKPADLKK
RIESLIDRDYMERDKENSNQYHYVA
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagaagatgttcagcaccagcagaagtccagctttaatggactcagcaaatcc
gccaaagcaggagcgtcgaagaagctggtcatcaagaactttaaagacagacccaagctg
acagactcctacactgaagacacgtggctgaagctcagagatgctgtgagcgccattcag
aacagcacatccatccaatacaacctggaggagctttaccaggctgtggagaatctgtgt
tcgtataaagtgtcgccgatgttgtacaagcagctgcgacaggtgtgtgaagagcacgtg
caggcgcagattcaccagttcagggaagagtctctggacagcctgtcgttcctgaagagg
atgaaccgctgctggcaggaccactgcagacagacgatcatgatccgcagtattttcctc
ttcctggaccgaacgtacgtcctccagaactcgctgctgccgtccatctgggacacaggg
ctggagctgttccgcacacacatagtgagtgacgcggcggttcagagccggacggtgcag
gggatcctggagcaggtggagcgcgagcgcagcggggagacggtggaccgcagtctgctc
aggagcctactgggcatgctctctgacctgcaggtgtataaggactcgttcgagcagagg
tttttatcagagacgacccgtctgtacgccgctgagggacagagactgatgcaggagaga
gacgttccagagtatctccatcatgtggcgcggcgtctggaggaagagaacgaccgcgtc
atcagctatctggaccagagcacacagaagcctctgatcgccacggtggagaagcagctg
ctgggagaacacatgaccaccatcctgcagaaaggcctgcggacgctgctggatgagaac
cgtgtgtgtgagctgacgctgctctatgagctcttcagtaaggttaaaggcggcctgacg
gcactgctgcagtcctggagagaatacatcaagagtgtgggagcggagacggtgtgttct
ccggagcgggacagggagatggtgcaggagctgctggactttaaggatcagatggactcg
gtgacgcagagctgcttccagaggaacgagagcttcatcaacgccatgaaggaggccttc
gagaacttcatcaaccagagacccaacaaacccgcagagctcatcgccaaatatgtggac
tctaagctgcgagcgggaaataaagaagccacagaggaggagctggagagaatcctggac
aagatcatgatcatcttccgcttcatccacggtaaggatgtgttcgaggcgttctacaag
aaggatctggccaagcgtctgctggtgggcaagagcgcttcagtggatgcagagaagtcc
atgctctccaaactcaaacacgagtgtggagcagcgttcaccagtaaacttgagggaatg
ttcaaagatatggagctctccaaagacatcatgatccagttcaaacagtatatgcagaat
caaactgagcccagcaacattgagctgaccgtcaacatcctgactatgggctactggccc
tcgtacacaccgatggacgtccatctgcctgctgagatggtgaagctgcaggaggtgttt
aagctcttctatctgggtaaacacagcggacggaaactacagtggcagccgacacttgga
cacgcagtgctgaagacagagtttaaagagggtaagaaggagctgcaggtttctctgttc
cagactctggttctgctgatgttcaatgagtctgacgagtgttcagtggaggagatcaga
gtggctacaggcatcgaggagggcgagctgaagcgtacgctgcagtctctggcgtgtggt
aaagctcgagtgctcaataagaccccccgagggaaagaggtggaggacggagaccgcttc
cacttcaacagcgacttcagacacaaactgttccgcatcaagatcaaccagatccagatg
aaggagacggtggaggagcaggtgagcaccaccgagcgtgtgtttcaggaccgtcagtat
cagatcgacgcggcggttgtgcgcatcatgaagatgaggaaaacactcagccacaacctg
ctggtgtctgaactatacaaccagctcaagttccctgtcaagccggcggatctgaagaag
cgtatcgagtccctcatcgaccgggattatatggagcgcgacaaagaaaactccaaccag
taccactatgtggcgtag
Danio rerio (zebrafish): 560313
Help
Entry
560313 CDS
T01004
Symbol
cul4b
Name
(RefSeq) cullin-4B
KO
K10609
cullin 4
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03420
Nucleotide excision repair
dre04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
560313 (cul4b)
09124 Replication and repair
03420 Nucleotide excision repair
560313 (cul4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dre04121
]
560313 (cul4b)
03400 DNA repair and recombination proteins [BR:
dre03400
]
560313 (cul4b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dre04147
]
560313 (cul4b)
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
560313 (cul4b)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
560313 (cul4b)
TCR (transcription coupled repair) factors
Cul4-CSA complex
560313 (cul4b)
Exosome [BR:
dre04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
560313 (cul4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
SecA_SW
NurA
Mucin2_WxxW
DUF3292
Motif
Other DBs
NCBI-GeneID:
560313
NCBI-ProteinID:
NP_001116316
ZFIN:
ZDB-GENE-041008-208
Ensembl:
ENSDARG00000060510
UniProt:
F8W428
LinkDB
All DBs
Position
14:38065069..38083438
Genome browser
AA seq
864 aa
AA seq
DB search
MFPTGLPSPNPPPPAQEPRPAASDVHNDSSLTSSKKRKINSSDKEDIDSISSSPKAICNS
SSTTSCSSSSQQQQQQQHIQKKLRFEDPLDLIGLDVKMAEESCNPSESCSKARNVFLPGG
VGHHANGLTKSAGSATFSNSKPGAAKKLVIKNFKEKPKLPENYTNETWQKLKEAVEAIQN
STSIKYNLEELYQAVENLCSHKISAKLYKQLRVVCEDHIKAQIDQFREDALDSVLFLKKI
DKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRFYIISDLKVQSKTIDG
ILLLIERERSGEAVDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQRLMQERE
VPEYLHHVNKRLEEEADRVITYLDQSTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENR
IQDLSLLYQLFSRVRGGVQVLLQHWIEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHI
IDVCFMKNEKFVNGMKEAFETFINKRPNKPAELIAKYVDSKLRAGNKEATDEELEKMLDK
IMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMF
KDMELSKDIMVQFKQHMQCQNIPGNIELTVNILTMGYWPTYVPMEVHLPAEMVRLQEIFK
TFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFSLEDIKL
ATGIEDSELRRTLQSLACGKARVLTKIPKSKDVEDGDKFSCNDDFKHKLFRIKINQIQMK
ETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKR
IESLIDRDYMERDKENPNQYNYVA
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgtttccaacaggtttaccttcccctaatcccccaccgccagcccaagagcccagaccg
gcagcttctgatgttcacaacgacagtagcttaacgtcttctaagaagaggaaaatcaac
agttcagacaaggaagacattgattcaatatcatcgtctcctaaagccatctgcaattcc
tcctccacaacgtcctgctcttccagttcacaacaacagcagcaacaacagcacatccag
aagaagttgaggttcgaggacccgctggatttgatcggactggatgtgaagatggccgag
gagtcctgtaacccatccgaatcctgttcaaaggcgagaaatgtgtttctgcccggcggt
gttgggcatcatgctaacggactgaccaagtctgcgggctccgctaccttctccaacagt
aaacccggtgctgcgaagaaacttgttatcaagaactttaaagaaaagcccaaattacca
gagaattacacaaatgagacctggcagaaactaaaggaggcagtagaggccatacagaac
agcacttcaataaagtacaatctagaggagctctatcaggctgttgaaaacttgtgctct
cataagatatctgccaagctgtataaacagctcagagtggtttgtgaagaccacatcaag
gcacagattgaccagttcagagaggatgccctagacagtgttctgttcctcaagaaaata
gacaaatgttggcaagatcactgcagacaaatgatcatgattaggagtatatttttgttt
ctggatcgcacatatgttttacaaaattctatgctgccatcaatctgggacatgggcttg
gagttgtttcgtttctatatcatcagcgacctgaaggtgcagagtaagacaatcgatggg
attctgcttcttattgagagggagcgaagcggcgaggctgtagaccgcagtcttctgagg
agtcttctgagcatgctctctgacctgcagatttatcaggattcatttgagcagcgcttt
ctggaggagacaaatcgactgtatgctgctgagggccagaggctcatgcaggaaagagag
gtgccagagtatctccatcatgtcaacaaacgtctagaagaagaggcagacagagtcatc
acatacttagaccagagcacacaaaaatccctcattgccacagtggaaaagcagctgctt
ggagaacacctcactgcaatacttcagaaaggtttgaataacttgctggatgagaaccgt
attcaggatctgtctctgctgtatcagctcttcagtcgcgtgagaggtggtgtgcaggtt
cttctgcagcattggatcgagtacatcaaggcctttggaagcacaattgtgatcaaccct
gagaaagacaagacgatggttcaggagcttctggatttcaaggataaagtcgaccacata
attgatgtatgtttcatgaagaatgaaaagtttgtaaatggcatgaaggaagccttcgag
acgtttatcaacaaacggccaaacaaacctgcagagctcatagcaaaatatgtggattca
aagctccgtgctgggaacaaagaggcaactgatgaggagctggagaaaatgttggacaag
ataatgatcatattcaggttcatttacggcaaagatgtttttgaagccttctacaagaaa
gacttagcgaagaggttactggtgggaaagagtgcctctgtagatgcagagaaatcaatg
ctgtcaaaactgaagcatgaatgtggagcagcatttactagtaaactggagggaatgttc
aaagacatggagctgtcgaaagatattatggtgcagttcaaacagcatatgcagtgccaa
aatattcctggtaacattgagctgacagtgaacatcctcactatgggctattggccaaca
tacgtccctatggaagtacatctgccagcagagatggtgagattgcaagagatcttcaaa
acgttttacctgggtaaacacagtggacggaaactacagtggcaatcaacgttaggacat
tgtgttttaaaggcggaatttaaagaggggaaaaaggagctgcaggtgtctctgtttcag
actttagttctgcttatgtttaatgaaggggaggaattctctctggaggacattaagctg
gccacaggcattgaggacagtgagctgaggcggacactgcagtctttggcctgcgggaag
gcaagagtcctcaccaaaatcccaaagagtaaagatgtggaggatggagacaagttctca
tgcaacgatgatttcaaacacaaactcttcagaattaaaatcaaccagatccagatgaaa
gaaacggtggaggagcaagccagcactacagagagagtattccaggatcgtcagtaccaa
atcgatgctgccattgttcgaatcatgaagatgaggaaaactctcagccataatcttctg
gtgtctgaggtgtacaaccaacttaagttcccagtcaagcctgctgatctgaagaagagg
atagagtcacttattgacagggactacatggaaagggataaggagaatcccaatcaatac
aactatgtggcttag
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integrated database retrieval system
