Danio rerio (zebrafish): 394039
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Entry
394039 CDS
T01004
Symbol
cpdp
Name
(RefSeq) CPD photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
394039 (cpdp)
Enzymes [BR:
dre01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
394039 (cpdp)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
394039 (cpdp)
Prokaryotic type
394039 (cpdp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
ClpB_D2-small
Motif
Other DBs
NCBI-GeneID:
394039
NCBI-ProteinID:
NP_957358
ZFIN:
ZDB-GENE-040426-1644
Ensembl:
ENSDARG00000099519
UniProt:
Q7SYI9
LinkDB
All DBs
Position
2:13907414..13940919
Genome browser
AA seq
516 aa
AA seq
DB search
MSANKNNLKRQMKSTISAGGKQPKLTGEKGKESGWLLKEVAELRRAAQGCEFNKKRLRYL
SDTQKVKQSSQGVLYWMSRDQRIQDNWALIYSQQLALAEKLPLHICFCLVPKFLDATYRQ
YAFMLKGLQEVVKECKSLDIEFHLLSGEPVHNLPAFVKSWNIGAVVTDFNPLRISLQWID
TVKKHLPSDIPFIQVDAHNVVPCWEASTKLEYGARTIRGKITKHLQEFLTDMPLVDTHPY
CASRAAKIIDWEEVLSSLEVDHNVCEVEWAQPGTTGGMFMLESFIDQRLHIFATHRNNPN
SDAVSHLSPWIHAGQLSAQRVVMQVKRKKNASESVASFIEEIVVRRELADNFCFYNQNYD
NISGAYDWAKKTLQEHAKDRRQYLYTKKELESAETHDQLWNAAQRQLLLEGKMHGFLRMY
WAKKILEWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWSICGIHDQGWAERPIFGKI
RYMNYAGCKRKFDVEQFERKYAAIKKNPNLNAKISV
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaaacaagaacaatctgaagcggcaaatgaagtcgacgatcagtgctggagga
aaacagccaaagctcaccggagaaaaaggcaaagagagcggctggctgttgaaggaagtg
gctgaactccgcagagcagcgcagggatgcgagttcaacaaaaagcgccttcgttatttg
tcagacacgcagaaggtcaaacagagctcacaaggagtactatactggatgtcccgcgat
caaagaattcaagacaactgggcattgatttatagtcagcagctggctttggctgagaag
cttcctctccatatctgcttctgtttggtgcccaaatttttggatgctacttacagacaa
tatgcctttatgctgaaagggctgcaagaagtggtaaaggaatgcaaaagcctggatatt
gagttccatttgctgtctggtgagcctgtgcataatctgccagcttttgttaaaagctgg
aacataggagctgttgtcaccgatttcaaccctcttagaatctcccttcaatggattgat
actgttaagaaacatcttccttctgacatccctttcattcaggttgatgcacataatgtg
gtgccatgctgggaagcatccacaaagctggaatatggagccaggacaatacggggcaaa
attacaaagcatctccaagaatttctcactgatatgccacttgtagacactcacccatat
tgcgcttctcgtgcagcaaagataatagattgggaggaggttctgtcatcactcgaggtg
gaccacaatgtttgtgaagtggaatgggctcagcctggcaccactggcggcatgtttatg
ctggagtccttcattgaccaacgactgcatatatttgccacccacaggaacaatcccaac
tctgacgccgttagccacctctccccatggattcatgctggtcagttatctgctcagcgt
gttgtgatgcaggtcaagcggaaaaagaatgccagcgagtctgtagcatcttttattgag
gaaattgttgtgcgaagggagctcgctgataacttctgcttctacaaccaaaactatgac
aatatttctggtgcatacgattgggcaaagaagactttgcaggagcatgctaaggaccgt
agacagtatctgtacacaaaaaaagagctggagagcgccgaaactcatgaccaattgtgg
aatgctgcacagcgtcagctgcttttagaaggaaagatgcatggctttctgcgcatgtac
tgggcaaagaagattctggagtggactgcatctcccgaagaagccttgtctatcgctata
tatctgaatgaccgtttgtctctagatggctgtgatcccaacggatatgtgggttgcatg
tggtccatctgtggaattcatgaccagggctgggcagagcgacccatctttggcaaaata
cgttacatgaattatgctggctgtaaaaggaagtttgatgtggagcagtttgaaaggaag
tatgctgctataaagaaaaaccctaatttgaatgctaagatatctgtatag
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integrated database retrieval system
