Danio rerio (zebrafish): 394039
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Entry
394039 CDS
T01004
Symbol
cpdP
Name
(RefSeq) CPD photolyase isoform X1
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
394039 (cpdP)
Enzymes [BR:
dre01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
394039 (cpdP)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
394039 (cpdP)
Prokaryotic type
394039 (cpdP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
ClpB_D2-small
Motif
Other DBs
NCBI-GeneID:
394039
NCBI-ProteinID:
XP_005168471
ZFIN:
ZDB-GENE-040426-1644
Ensembl:
ENSDARG00000099519
UniProt:
A0A8M2BFQ9
LinkDB
All DBs
Position
2:16368746..16420149
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AA seq
534 aa
AA seq
DB search
MFHIRVLIFRSIRDLTTNMSANKNNLKRQMKSTISAGGKQPKLTGEKGKESGWLLKEVAE
LRRAAQGCEFNKKRLRYLSDTQKVKQSSQGVLYWMSRDQRIQDNWALIYSQQLALAEKLP
LHICFCLVPKFLDATYRQYAFMLKGLQEVVKECKSLDIEFHLLSGEPVHNLPAFVKSWNI
GAVVTDFNPLRISLQWIDTVKKHLPSDIPFIQVDAHNVVPCWEASTKLEYGARTIRGKIT
KHLQEFLTDMPLVDTHPYCASRAAKIIDWEEVLSSLEVDHNVCEVEWAQPGTTGGMFMLE
SFIDQRLHIFATHRNNPNSDAVSHLSPWIHAGQLSAQRVVMQVKRKKNASESVASFIEEI
VVRRELADNFCFYNQNYDNISGAYDWAKKTLQEHAKDRRQYLYTKKELESAETHDQLWNA
AQRQLLLEGKMHGFLRMYWAKKILEWTASPEEALSIAIYLNDRLSLDGCDPNGYVGCMWS
ICGIHDQGWAERPIFGKIRYMNYAGCKRKFDVEQFERKYAAIKKNPNLNAKISV
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atgtttcatattagagtgctgatctttcgttccatcagagacctgaccaccaacatgtct
gcaaacaagaacaatctgaagcggcaaatgaagtcgacgatcagtgctggaggaaaacag
ccaaagctcaccggagaaaaaggcaaagagagcggctggctgttgaaggaagtggctgaa
ctccgcagagcagcgcagggatgcgagttcaacaaaaagcgccttcgttatttgtcagac
acgcagaaggtcaaacagagctcacaaggagtactatactggatgtcccgcgatcaaaga
attcaagacaactgggcattgatttatagtcagcagctggctttggctgagaagcttcct
ctccatatctgcttctgtttggtgcccaaatttttggatgctacttacagacaatatgcc
tttatgctgaaagggctgcaagaagtggtaaaggaatgcaaaagcctggatattgagttc
catttgctgtctggtgagcctgtgcataatctgccagcttttgttaaaagctggaacata
ggagctgttgtcaccgatttcaaccctcttagaatctcccttcaatggattgatactgtt
aagaaacatcttccttctgacatccctttcattcaggttgatgcacataatgtggtgcca
tgctgggaagcatccacaaagctggaatatggagccaggacaatacggggcaaaattaca
aagcatctccaagaatttctcactgatatgccacttgtagacactcacccatattgcgct
tctcgtgcagcaaagataatagattgggaggaggttctgtcatcactcgaggtggaccac
aatgtttgtgaagtggaatgggctcagcctggcaccactggcggcatgtttatgctggag
tccttcattgaccaacgactgcatatatttgccacccacaggaacaatcccaactctgac
gccgttagccacctctccccatggattcatgctggtcagttatctgctcagcgtgttgtg
atgcaggtcaagcggaaaaagaatgccagcgagtctgtagcatcttttattgaggaaatt
gttgtgcgaagggagctcgctgataacttctgcttctacaaccaaaactatgacaatatt
tctggtgcatacgattgggcaaagaagactttgcaggagcatgctaaggaccgtagacag
tatctgtacacaaaaaaagagctggagagcgccgaaactcatgaccaattgtggaatgct
gcacagcgtcagctgcttttagaaggaaagatgcatggctttctgcgcatgtactgggca
aagaagattctggagtggactgcatctcccgaagaagccttgtctatcgctatatatctg
aatgaccgtttgtctctagatggctgtgatcccaacggatatgtgggttgcatgtggtcc
atctgtggaattcatgaccagggctgggcagagcgacccatctttggcaaaatacgttac
atgaattatgctggctgtaaaaggaagtttgatgtggagcagtttgaaaggaagtatgct
gctataaagaaaaaccctaatttgaatgctaagatatctgtatag
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