KEGG   Danio rerio (zebrafish): 394247
Entry
394247            CDS       T01004                                 
Symbol
pafah1b1b
Name
(RefSeq) lissencephaly-1 homolog B
  KO
K16794  platelet-activating factor acetylhydrolase IB subunit alpha
Organism
dre  Danio rerio (zebrafish)
Pathway
dre00565  Ether lipid metabolism
dre01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:dre00001]
 09100 Metabolism
  09103 Lipid metabolism
   00565 Ether lipid metabolism
    394247 (pafah1b1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dre03036]
    394247 (pafah1b1b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    394247 (pafah1b1b)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    394247 (pafah1b1b)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   394247 (pafah1b1b)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st EIF3I WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR75_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_EML Beta-prop_Nup120_160 Beta-prop_Vps41 Beta-prop_DCAF4 WDR90_beta-prop_4th WD40_RFWD3 LisH Beta-prop_RIG_2nd Beta-prop_SPT8 LisH_PAC1 Beta-prop_IFT140_1st Beta-prop_DCAF12 eIF2A Beta-prop_WDR35_TULP_N Nucleoporin_N Beta-prop_NUP159_NUP214 Ge1_WD40 Pox_A_type_inc ARMC9_LisH LisH_2 SutA-RBD DUF2570
Other DBs
NCBI-GeneID: 394247
NCBI-ProteinID: NP_958503
ZFIN: ZDB-GENE-040116-3
Ensembl: ENSDARG00000026595
UniProt: Q803D2
LinkDB
Position
21:42708277..42738538
AA seq 410 aa
MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDVNDELDKKFAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEITLGGPVGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF
SLMVSASEDATIKVWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTMKMWEVATGYCVKTFTGHREWVRMV
RPNQDGTLLASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESAHPTISEATGSE
NKKSGKPGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFHPGGRFVVSCADDK
TLRIWDYKNKRCMKTLSAHEHFVTSLDFHKASPYVVTGSVDQTVKVWECR
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggtgctgtcacagaggcaacgagatgaactaaatcgagctatagctgattatttgcgc
tccaatggctatgaagaggcatattccacttttaagaaggaggcagagttggatgtgaat
gatgagttggataagaagtttgcaggacttttggaaaagaaatggacttcggtcatcaga
ttacaaaaaaaggtaatggagttggagtctaaactaaatgaagctaaggaggagatcact
ttaggaggccccgtggggcagaaacgagaccccaaagagtggatcccacgcccaccggag
aagtacgccctcagcggacacagaagccctgtcacacgcgtcatcttccaccctgtgttc
agcctcatggtctccgcctcagaggacgccactataaaggtgtgggactatgaggctggt
gattttgagcgaaccctgaagggtcacactgactcggtgcaggacatctcctttgaccag
actggaaagctgctggcttcttgctccgctgacatgaccatcaaactctgggatttccag
ggctttgagtgcatcaggaccatgcacggacacgatcacaatgtgtcgtcagttgccatc
atgcctaacggtgaccacatagtgtctgcttccagggataagacgatgaagatgtgggaa
gtggccactggttactgcgtgaagacgttcacaggtcacagagagtgggttcgtatggtc
cggcccaatcaagacggcacgctgttggccagctgctccaatgaccagacggtgcgcgtg
tgggtcgtggccaccaaagagtgcaaggcggagctgagggagcacgagcatgtggtggag
tgtatctcctgggcccctgagagcgcacatcctactatatccgaggccacaggctctgag
aacaagaagagtggaaagcctgggccattcctgttatctggatccagagacaagaccatt
aaaatgtgggacatcagtactggcatgtgccttatgacactggttggccatgataactgg
gtgcgtggagtgctgtttcatccgggcgggaggtttgtggtgagctgtgctgatgacaag
acccttcgtatctgggactataagaacaagcgctgcatgaagaccctcagtgcccatgaa
cactttgttacctctttggatttccacaagacttctccttacgtggtaacaggaagtgta
gatcaaacggtcaaagtgtgggaatgtcgctga

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