Danio rerio (zebrafish): 402989
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Entry
402989 CDS
T01004
Symbol
u2af2b
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2b
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
402989 (u2af2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
402989 (u2af2b)
Spliceosome [BR:
dre03041
]
Complex A
U2 snRNP components
U2 related factors
402989 (u2af2b)
Complex B
402989 (u2af2b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_MUD2_C
DUF8489
RRM_occluded
RRM_7
F07F6_N
Motif
Other DBs
NCBI-GeneID:
402989
NCBI-ProteinID:
NP_991252
ZFIN:
ZDB-GENE-040426-1881
Ensembl:
ENSDARG00000011740
UniProt:
Q6P022
LinkDB
All DBs
Position
19:complement(11394964..11420200)
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AA seq
475 aa
AA seq
DB search
MSDFDEFERQLSENKQGDSLNGHERDKENRHRRRSPSRSRSRERKRRSRERRSRERRGDS
KERRHRRSDHTQNHPQENVSRSPHREKKKKIKKYWDVPPPGFEHITPMQYKAMQAAGQIP
ATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMRLGG
LTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQAQSLKIRRPHDYQPLPG
MSENPSVYVPGVVSTVVPDSIHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG
LSKGYAFCEYVDVNVNDQAIAGLNGMQLADKKLLVQRASVGAKNATMTSINETPVTLQVP
GLTSNPMIQMGGIPTEVLCLMNMVAPEELIDDEEYEEIVEDVKEECSKYGQVKSIEIPRP
VDGLDIPGTGKIFVEFTSVYDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRRDFW
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattttgatgaatttgagagacagctgtctgaaaataaacaaggtgacagtcta
aacggtcatgagagggacaaggagaaccggcaccggcgacgcagtccgtcccgcagccgc
agtcgagaacggaagagaaggagcagagagaggagaagcagggagcgccgcggtgacagc
aaggaacgccgacacagacgcagcgatcatacacagaaccacccccaagaaaatgtcagc
cgttcacctcaccgggagaaaaagaagaaaattaagaagtactgggatgtccctcctcca
ggctttgagcatattactccaatgcagtataaggcaatgcaagctgctggtcaaatcccc
gctaccgctttgctgcccaccatgacgccagacggcctggcagtaacgccgaccccggtg
cctgtagtaggcagtcagatgactcgccaggctcgcagactttacgttggcaacatccca
tttggcatcacagaggaatctatgatggacttcttcaatgctcagatgagattgggtggt
ctgactcaggcccctggaaaccctgtcctcgccgtccagattaaccaggataagaacttt
gctttccttgagttccgatcagtggatgagaccacgcaggccatggcattcgatggcatc
atcttccaggcacagagcttaaagattcgcagaccgcatgactatcagccattacctggc
atgagcgagaaccccagcgtttatgtgccaggtgtggtgtctactgttgtaccagactct
attcacaagctgttcattggaggtttaccaaactatctcaatgacgaccaggttaaagag
ttgttgacctcttttggacctctcaaagccttcaatctggttaaggacagtgctaccggc
ctgtcaaagggttatgctttctgtgaatatgtggatgttaacgtcaatgatcaggctatt
gcaggattgaatggcatgcagttggcagataagaagctgctggttcagagggcaagtgtt
ggagccaagaatgccacaatgacgagtataaacgagactccagtgacgttgcaagtgcct
ggcctcacatccaaccccatgatccagatgggcggtattcccactgaggtcctgtgtctg
atgaacatggtggctccagaggagcttatcgacgatgaggagtacgaggagatcgtggag
gacgtcaaagaggagtgctctaaatatggccaggtcaagagcatagaaattcccagaccc
gtcgatggccttgatatacctggaactggcaagatctttgtggagttcacctctgtttac
gactcccagaaggccatgcagggcttaacggggagaaagttcgccaacagggtggtggtg
accaagtactgcgatccagacgcttatcatcgccgagacttctggtag
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