Danio rerio (zebrafish): 403020
Help
Entry
403020 CDS
T01004
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
403020 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
403020 (smarcc1a)
03036 Chromosome and associated proteins [BR:
dre03036
]
403020 (smarcc1a)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
403020 (smarcc1a)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
403020 (smarcc1a)
PBAF complex
403020 (smarcc1a)
GBAF(ncBAF) complex
403020 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
BRCT_2
HEAT_GCN1
BRCT
Chromo
Motif
Other DBs
NCBI-GeneID:
403020
NCBI-ProteinID:
XP_003200294
ZFIN:
ZDB-GENE-080514-3
Ensembl:
ENSDARG00000017397
UniProt:
F1Q9K1
LinkDB
All DBs
Position
16:complement(46850191..46887963)
Genome browser
AA seq
1089 aa
AA seq
DB search
MATAATAAGGTGSGGPSAGQTGAGSSIGRKKDGGPSSKYWESSETVSQLETVRLWIGKHY
KKHVQTDSPTSKTLAALVVQLLQFQEDAFGRRVSNPALTKLPAKSFLDFKPGGALCHILG
SAYKFKSEQGWRRFDLQNPSRMDRNVEMFMTIEKTLVQNNSLTRPIVYIVSDVEQKQANK
LKDIIKRHQGTITEDKSKATHIIYPSPTQMEEEEWLRPVMRKDKQVLVHWGYYPDSYDIW
VSTSDVDADVEDPPSSEKPWRVHAKWVIDTDAFNEWMNEEDYEVDENKKPVSFRQRIFPG
EDVSSRTPDRKERKSLVAGKKRRRSPSPPSTPVESRKKGKKGNPGSQWRRRGQPIDDEQD
EDSTKDLEDPSPVPGMEEVTLPKNVNQKKDSENTPVKGGIHNDLDDQEDDSVTSGGKEDD
EQSKAEVNRLIDSEDNVTEQTHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKTPE
IYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAESRP
LPMGPPPTSHFNVLADTPSGLVPLHHRPPQVPPAQQMLNFPEKGKDKPTDLQNFGLRTDI
YSKKNLKGKGAAGGRDWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPI
EDQYLESSDASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALDEFSRVR
EEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTEPTETEKMDTDSD
SQQPDKAESKDEAEKPSESAEKPAETEKEKIETTEKSEPQEEEESEAGETKTAEKEKEEA
METTEEGKEDEEEQEEGKKKLELDIGEGNIATAAAAALASAATKAKHLAAVEERKIKSLV
ALLVETQMKKLELKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYAEMKARQ
QMEQQAAVQQNAGGHHGPPPHGPPPGMHPGHPGHPGHPGPGFPPMHHPMGPHHTPQTGPM
VGPGQPMPGRMMSGPPPQGGIAPMMGPRHPGPPNGMYPGPPPPTAQPDGMPPGPVGPPPS
VPATRAAEN
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcgactgcagcgggcggaacgggctccggaggaccatctgccggccaa
acgggcgccggttcctcgatcggacgtaaaaaagacggagggccatcttccaagtattgg
gagagctcggaaacggtgtcccagttggagacagttcgcttgtggatcgggaaacattat
aagaagcatgtccagactgactctcctacaagcaaaacattggctgcactggtggtgcaa
ttgctgcagtttcaagaggatgcatttggacgtagagtcagcaatcctgccctcaccaaa
ctacctgcaaagagctttctggacttcaaacctggaggagccctttgccacattttggga
tctgcatacaaattcaaaagcgagcagggctggaggaggtttgatcttcagaacccatcc
agaatggatagaaatgtggagatgttcatgactattgaaaagactcttgttcagaacaac
tctttgaccagacctattgtgtacattgtgtctgacgttgagcagaagcaagccaacaag
cttaaagacatcattaagagacatcagggaaccatcactgaagacaagtcaaaggccact
catattatttatccctccccaacccagatggaggaagaggaatggctgcgtcctgttatg
cgcaaagacaagcaagtgcttgttcactggggatattaccctgacagttacgatatatgg
gtgtcaacaagtgatgtggatgcagatgttgaggatcctccaagttctgagaagccatgg
cgggtgcatgctaaatgggtcattgacaccgatgctttcaacgagtggatgaatgaggaa
gattatgaagtagatgagaacaagaagcctgtgagtttccgccagcggatcttcccaggg
gaagatgtgtcttcccgtacacccgatcgtaaggaacgcaagtccctggttgctggcaag
aagaggagacgctctccatctccacctagcacccctgtggagtcgcgcaagaagggcaag
aaagggaatcctggaagtcagtggaggcggcgtggacaaccaattgatgacgaacaggat
gaagattcaacaaaggaccttgaagatccctctcctgtgccgggaatggaggaagttaca
ttgccaaaaaatgtcaatcagaaaaaggacagcgagaacacaccagtgaagggtggaatt
cacaatgatttagatgaccaggaagatgactctgtgacatctggtggcaaggaggatgat
gaacagagcaaagcagaggtcaatcgtctgatcgactctgaggacaacgtgactgagcaa
acccatcacatcatcatccccagctatgctgcctggtttgactataacagtatacatgaa
attgagagacgtgccctgccagagttcttcaatggcaaaaacaaatcgaagactccggag
atttatcttgcctatcgtaacttcatgattgacacttaccggctgaatcctcaggagtac
ctgacctcaacctcctgcaggaggaacctcactggagatgtctgtgcggtcatgagagtg
catgccttcttggagcagtggggactggtgaactaccaggtggacgcggagagcagacct
ctccctatgggccctccaccaacctcacatttcaatgttctggctgatactccctctggc
ctggtgccgctgcaccaccgtcccccacaggttccccctgctcagcagatgctgaacttc
ccagaaaagggcaaagacaagccaaccgacctgcagaactttggcctccgtacagatatt
tactccaagaagaatctcaagggtaaaggagctgcaggtggcagagactggacagaacaa
gaaacattgcttctgttagaggctttggaaatgtacaaggatgactggaataaagtttct
gagcatgtgggcagtcgtacacaagatgagtgcatcttgcacttcctgcggttgcccata
gaggatcagtacctggagagctctgacgcttcgctaggccctcttgcctaccagccgatc
ccattcagtcaatcagggaatccagttatgagcacggttgcgttcctcgcctctgttgtg
gatccgcgtgtggccgcggctgctgccaaagctgctctggatgagttctcccgtgtgcgt
gaggaggttcctgcagagctagtggaggctcatgtgaagaaggtgcaggaagccgcacgc
agcacagggaaagtggaccctgcatttggcctggagagcagtggcattgctggcacagct
cctgaagaacccgagaagacggaacctacagagactgagaaaatggacacagactccgac
tcccagcagcctgataaggcggagtcaaaggatgaagcagagaaacccagcgagtctgca
gaaaagccagccgagacagagaaggaaaaaattgagactacagagaaatctgagccacag
gaagaggaagaaagtgaggcaggagagaccaagacagcagagaaagaaaaagaggaggcc
atggagaccacagaggaagggaaggaggatgaggaggagcaggaggaaggaaagaaaaag
ctggagttggatattggagagggcaacatcgccaccgctgcagccgccgctctggcctct
gccgccaccaaggcaaagcacctggctgcagtggaagagaggaagatcaaatctcttgtt
gctctgctagtggagactcagatgaagaagctggagctcaaactcagacactttgaagag
ctggagaccattatggaccgtgaaaaggaagctctggagctccagaggcagcagcttttg
accgagcgacaggcgttccacatggagcagctgaagtatgctgagatgaaggcccgtcag
cagatggagcagcaggcagcggtgcagcaaaacgctggaggacatcatggtcctcctcca
catggaccacctccaggcatgcaccctggacatccaggacatcctggacaccccggccct
ggatttccaccaatgcaccaccccatgggtccacatcacacccctcagacaggaccaatg
gttggaccaggtcagcctatgccaggccgaatgatgtctggacctcccccacagggtgga
atagcaccaatgatgggacctcgacaccctgggccaccaaacggcatgtacccaggtcct
cctcctccaaccgcacagcctgatgggatgcctcccggcccagtgggaccccctccatct
gtgcccgctactcgtgctgctgaaaactaa
DBGET
integrated database retrieval system
